PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3651-3700 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | INDEL | C6_15 | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C6_15 | segdup | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | D16_PLUS | segdup | * | 94.9153 | 96.5517 | 93.3333 | 95.9541 | 56 | 2 | 56 | 4 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | segdup | het | 94.5946 | 100.0000 | 89.7436 | 96.2998 | 37 | 0 | 35 | 4 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | segdup | hetalt | 87.5000 | 77.7778 | 100.0000 | 93.0233 | 7 | 2 | 9 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D16_PLUS | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 96.0000 | 12 | 0 | 12 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | segdup | * | 99.5010 | 99.3654 | 99.6370 | 94.5866 | 1096 | 7 | 1098 | 4 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | segdup | het | 99.3497 | 99.2775 | 99.4220 | 94.7071 | 687 | 5 | 688 | 4 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | segdup | hetalt | 98.0392 | 96.1538 | 100.0000 | 95.6780 | 50 | 2 | 51 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 359 | 0 | 359 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | C1_5 | segdup | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C1_5 | segdup | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C1_5 | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C1_5 | segdup | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | INDEL | I6_15 | segdup | * | 99.4253 | 98.8571 | 100.0000 | 91.7776 | 173 | 2 | 173 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | segdup | het | 99.3939 | 98.7952 | 100.0000 | 92.6060 | 82 | 1 | 82 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | segdup | hetalt | 98.8764 | 97.7778 | 100.0000 | 89.6956 | 44 | 1 | 44 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 91.7254 | 47 | 0 | 47 | 0 | 0 | ||
| hfeng-pmm3 | SNP | * | segdup | * | 99.7170 | 99.8183 | 99.6159 | 89.5042 | 28016 | 51 | 28010 | 108 | 8 | 7.4074 | |
| hfeng-pmm3 | SNP | * | segdup | het | 99.5790 | 99.7344 | 99.4241 | 89.8527 | 17271 | 46 | 17265 | 100 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | * | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.5352 | 7 | 0 | 7 | 0 | 0 | ||
| hfeng-pmm3 | SNP | * | segdup | homalt | 99.9395 | 99.9535 | 99.9256 | 88.8624 | 10738 | 5 | 10738 | 8 | 8 | 100.0000 | |
| hfeng-pmm3 | SNP | ti | segdup | * | 99.7137 | 99.8311 | 99.5965 | 88.9183 | 19504 | 33 | 19502 | 79 | 3 | 3.7975 | |
| hfeng-pmm3 | SNP | ti | segdup | het | 99.5602 | 99.7506 | 99.3705 | 89.3230 | 12000 | 30 | 11998 | 76 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | segdup | * | 99.4321 | 99.1501 | 99.7156 | 94.0254 | 1050 | 9 | 1052 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | I1_5 | segdup | het | 99.5342 | 99.2565 | 99.8134 | 94.7961 | 534 | 4 | 535 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | segdup | hetalt | 96.7742 | 93.7500 | 100.0000 | 95.9965 | 45 | 3 | 46 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | segdup | homalt | 99.5772 | 99.5772 | 99.5772 | 92.3820 | 471 | 2 | 471 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | segdup | * | 95.7265 | 96.5517 | 94.9153 | 95.4334 | 56 | 2 | 56 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | segdup | het | 95.8904 | 100.0000 | 92.1053 | 95.6867 | 37 | 0 | 35 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | segdup | hetalt | 87.5000 | 77.7778 | 100.0000 | 92.8571 | 7 | 2 | 9 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 95.7895 | 12 | 0 | 12 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | segdup | * | 97.0509 | 94.7644 | 99.4505 | 92.8823 | 181 | 10 | 181 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | segdup | het | 97.7778 | 95.6522 | 100.0000 | 94.1216 | 88 | 4 | 88 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | segdup | hetalt | 93.4783 | 87.7551 | 100.0000 | 90.3587 | 43 | 6 | 43 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | segdup | homalt | 99.0099 | 100.0000 | 98.0392 | 91.6938 | 50 | 0 | 50 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | segdup | * | 98.9474 | 100.0000 | 97.9167 | 95.0515 | 47 | 0 | 47 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | segdup | het | 100.0000 | 100.0000 | 100.0000 | 95.1120 | 24 | 0 | 24 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.3510 | 4 | 0 | 4 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | segdup | homalt | 97.4359 | 100.0000 | 95.0000 | 93.9024 | 19 | 0 | 19 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | segdup | * | 99.6820 | 99.4560 | 99.9091 | 93.9277 | 1097 | 6 | 1099 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | segdup | het | 99.6380 | 99.4220 | 99.8551 | 93.8431 | 688 | 4 | 689 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | segdup | hetalt | 98.0392 | 96.1538 | 100.0000 | 95.3425 | 50 | 2 | 51 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 93.8242 | 359 | 0 | 359 | 0 | 0 | ||
| jlack-gatk | INDEL | D16_PLUS | segdup | * | 96.5517 | 96.5517 | 96.5517 | 97.0272 | 56 | 2 | 56 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | D16_PLUS | segdup | het | 97.2973 | 100.0000 | 94.7368 | 97.4717 | 37 | 0 | 36 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | D16_PLUS | segdup | hetalt | 87.5000 | 77.7778 | 100.0000 | 93.1624 | 7 | 2 | 8 | 0 | 0 | ||
| jlack-gatk | INDEL | D16_PLUS | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 96.3746 | 12 | 0 | 12 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | segdup | * | 95.5828 | 98.9121 | 92.4704 | 95.7903 | 1091 | 12 | 1093 | 89 | 5 | 5.6180 | |
| jlack-gatk | INDEL | D1_5 | segdup | het | 93.5227 | 98.8439 | 88.7451 | 96.2758 | 684 | 8 | 686 | 87 | 3 | 3.4483 | |