PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
36251-36300 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 8.3333 | 0.0000 | 0.0000 | 1 | 11 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 0.0000 | 0.0000 | 90.9091 | 0 | 4 | 0 | 1 | 1 | 100.0000 | ||
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 75.0000 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 13.3333 | 100.0000 | 7.1429 | 86.0000 | 1 | 0 | 1 | 13 | 0 | 0.0000 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 15.3846 | 100.0000 | 8.3333 | 80.6452 | 1 | 0 | 1 | 11 | 0 | 0.0000 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 94.7368 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 31.2655 | 77.7778 | 19.5652 | 86.4307 | 7 | 2 | 9 | 37 | 2 | 5.4054 | |
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 33.1034 | 85.7143 | 20.5128 | 82.6667 | 6 | 1 | 8 | 31 | 1 | 3.2258 | |
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 22.2222 | 50.0000 | 14.2857 | 93.8596 | 1 | 1 | 1 | 6 | 1 | 16.6667 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 37.5000 | 75.0000 | 25.0000 | 86.6667 | 6 | 2 | 8 | 24 | 2 | 8.3333 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 39.5480 | 83.3333 | 25.9259 | 83.4356 | 5 | 1 | 7 | 20 | 1 | 5.0000 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 28.5714 | 50.0000 | 20.0000 | 93.5065 | 1 | 1 | 1 | 4 | 1 | 25.0000 | |
| cchapple-custom | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 76.9231 | 62.5000 | 100.0000 | 95.9350 | 5 | 3 | 5 | 0 | 0 | ||
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 80.0000 | 66.6667 | 100.0000 | 96.1538 | 4 | 2 | 4 | 0 | 0 | ||
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 66.6667 | 50.0000 | 100.0000 | 94.7368 | 1 | 1 | 1 | 0 | 0 | ||
| ciseli-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 0.0000 | 0.0000 | 87.5000 | 0 | 0 | 0 | 2 | 2 | 100.0000 | ||
| ciseli-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 0.0000 | 0.0000 | 75.0000 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ciseli-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 91.6667 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 36.5732 | 34.6847 | 38.6792 | 60.6679 | 77 | 145 | 82 | 130 | 106 | 81.5385 | |
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 54.6535 | 62.0000 | 48.8636 | 68.3453 | 31 | 19 | 43 | 45 | 30 | 66.6667 | |
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 5.6000 | 0.0000 | 0.0000 | 7 | 118 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 45.6140 | 82.9787 | 31.4516 | 52.4904 | 39 | 8 | 39 | 85 | 76 | 89.4118 | |
| ciseli-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 0.0000 | 0.0000 | 84.2105 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| ciseli-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 80.0000 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 50.4202 | 43.4783 | 60.0000 | 40.6780 | 20 | 26 | 21 | 14 | 13 | 92.8571 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 58.0645 | 50.0000 | 69.2308 | 31.5789 | 4 | 4 | 9 | 4 | 4 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 16.0000 | 0.0000 | 0.0000 | 4 | 21 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 68.5714 | 92.3077 | 54.5455 | 45.0000 | 12 | 1 | 12 | 10 | 9 | 90.0000 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 28.3794 | 25.3333 | 32.2581 | 67.7083 | 19 | 56 | 20 | 42 | 24 | 57.1429 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 43.2314 | 69.2308 | 31.4286 | 72.4409 | 9 | 4 | 11 | 24 | 11 | 45.8333 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 2.0408 | 0.0000 | 0.0000 | 1 | 48 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 45.0000 | 69.2308 | 33.3333 | 58.4615 | 9 | 4 | 9 | 18 | 13 | 72.2222 | |