PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
35251-35300 / 86044 show all | |||||||||||||||
| egarrison-hhga | SNP | * | map_l100_m0_e0 | hetalt | 90.3226 | 87.5000 | 93.3333 | 81.0127 | 14 | 2 | 14 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | * | map_l100_m0_e0 | homalt | 99.7759 | 99.6299 | 99.9223 | 61.7548 | 11577 | 43 | 11577 | 9 | 8 | 88.8889 | |
| eyeh-varpipe | INDEL | * | map_l100_m0_e0 | * | 95.8235 | 95.2655 | 96.3881 | 94.1040 | 1489 | 74 | 2295 | 86 | 59 | 68.6047 | |
| eyeh-varpipe | INDEL | * | map_l100_m0_e0 | het | 96.6024 | 96.1802 | 97.0283 | 84.1962 | 982 | 39 | 1404 | 43 | 23 | 53.4884 | |
| eyeh-varpipe | INDEL | * | map_l100_m0_e0 | hetalt | 58.2726 | 42.4242 | 93.0233 | 93.1746 | 14 | 19 | 40 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | INDEL | * | map_l100_m0_e0 | homalt | 96.1789 | 96.8566 | 95.5107 | 86.4425 | 493 | 16 | 851 | 40 | 34 | 85.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | map_l100_m0_e0 | * | 0.0000 | 0.0000 | 95.4545 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| eyeh-varpipe | INDEL | C16_PLUS | map_l100_m0_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | C16_PLUS | map_l100_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | C16_PLUS | map_l100_m0_e0 | homalt | 0.0000 | 0.0000 | 87.5000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| egarrison-hhga | SNP | tv | map_l100_m0_e0 | * | 99.2887 | 98.8632 | 99.7179 | 67.1372 | 10958 | 126 | 10958 | 31 | 14 | 45.1613 | |
| egarrison-hhga | SNP | tv | map_l100_m0_e0 | het | 99.0740 | 98.5184 | 99.6359 | 68.9508 | 7115 | 107 | 7115 | 26 | 10 | 38.4615 | |
| egarrison-hhga | SNP | tv | map_l100_m0_e0 | hetalt | 90.3226 | 87.5000 | 93.3333 | 81.0127 | 14 | 2 | 14 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | tv | map_l100_m0_e0 | homalt | 99.7265 | 99.5580 | 99.8956 | 63.0055 | 3829 | 17 | 3829 | 4 | 3 | 75.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m0_e0 | * | 81.8182 | 81.8182 | 81.8182 | 85.3333 | 9 | 2 | 9 | 2 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m0_e0 | het | 87.5000 | 87.5000 | 87.5000 | 85.1852 | 7 | 1 | 7 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.3333 | 1 | 0 | 1 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m0_e0 | homalt | 50.0000 | 50.0000 | 50.0000 | 86.6667 | 1 | 1 | 1 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m0_e0 | * | 97.2110 | 97.1031 | 97.3190 | 85.5164 | 838 | 25 | 1089 | 30 | 15 | 50.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m0_e0 | het | 98.0166 | 97.9695 | 98.0636 | 83.8904 | 579 | 12 | 709 | 14 | 4 | 28.5714 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 57.3529 | 42.8571 | 86.6667 | 94.8980 | 6 | 8 | 13 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m0_e0 | homalt | 97.1860 | 98.0620 | 96.3255 | 87.0584 | 253 | 5 | 367 | 14 | 10 | 71.4286 | |
| eyeh-varpipe | INDEL | C6_15 | map_l100_m0_e0 | * | 0.0000 | 0.0000 | 100.0000 | 98.1308 | 0 | 0 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | map_l100_m0_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | C6_15 | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 92.8571 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | map_l100_m0_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 97.4359 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m0_e0 | * | 69.3878 | 60.7143 | 80.9524 | 90.2326 | 17 | 11 | 17 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m0_e0 | het | 78.7879 | 68.4211 | 92.8571 | 87.8261 | 13 | 6 | 13 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 4 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 66.6667 | 80.0000 | 57.1429 | 91.3580 | 4 | 1 | 4 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l100_m0_e0 | * | 97.7243 | 97.7901 | 97.6585 | 83.5553 | 531 | 12 | 1001 | 24 | 17 | 70.8333 | |
| eyeh-varpipe | INDEL | I1_5 | map_l100_m0_e0 | het | 97.5785 | 97.5460 | 97.6109 | 82.4235 | 318 | 8 | 572 | 14 | 8 | 57.1429 | |
| eyeh-varpipe | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 85.5305 | 77.7778 | 95.0000 | 91.5966 | 7 | 2 | 19 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l100_m0_e0 | homalt | 98.4417 | 99.0385 | 97.8520 | 84.2540 | 206 | 2 | 410 | 9 | 8 | 88.8889 | |
| eyeh-varpipe | INDEL | I6_15 | map_l100_m0_e0 | * | 82.7852 | 75.7576 | 91.2500 | 78.7798 | 25 | 8 | 73 | 7 | 5 | 71.4286 | |
| eyeh-varpipe | INDEL | I6_15 | map_l100_m0_e0 | het | 81.4747 | 76.4706 | 87.1795 | 78.5714 | 13 | 4 | 34 | 5 | 3 | 60.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 68.8889 | 2 | 2 | 14 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l100_m0_e0 | homalt | 87.7193 | 83.3333 | 92.5926 | 82.0000 | 10 | 2 | 25 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l100_m0_e0 | * | 81.4941 | 77.6699 | 85.7143 | 87.9676 | 80 | 23 | 102 | 17 | 16 | 94.1176 | |
| eyeh-varpipe | INDEL | D6_15 | map_l100_m0_e0 | het | 91.4037 | 93.3333 | 89.5522 | 86.6534 | 56 | 4 | 60 | 7 | 6 | 85.7143 | |
| eyeh-varpipe | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 41.6667 | 26.3158 | 100.0000 | 86.7925 | 5 | 14 | 14 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | map_l100_m0_e0 | homalt | 76.3271 | 79.1667 | 73.6842 | 90.0262 | 19 | 5 | 28 | 10 | 10 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m0_e0 | * | 51.3761 | 36.3636 | 87.5000 | 70.3704 | 4 | 7 | 7 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m0_e0 | het | 54.5455 | 37.5000 | 100.0000 | 64.2857 | 3 | 5 | 5 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m0_e0 | homalt | 57.1429 | 50.0000 | 66.6667 | 76.9231 | 1 | 1 | 2 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l100_m0_e0 | * | 0.0000 | 0.0000 | 90.6250 | 96.3387 | 0 | 0 | 29 | 3 | 1 | 33.3333 | |
| eyeh-varpipe | INDEL | C1_5 | map_l100_m0_e0 | het | 0.0000 | 0.0000 | 82.3529 | 96.3830 | 0 | 0 | 14 | 3 | 1 | 33.3333 | |
| eyeh-varpipe | INDEL | C1_5 | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 99.0291 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | map_l100_m0_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 95.3488 | 0 | 0 | 14 | 0 | 0 | ||