PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
34801-34850 / 86044 show all | |||||||||||||||
| gduggal-bwavard | SNP | tv | map_l100_m0_e0 | * | 93.8772 | 97.8167 | 90.2427 | 78.7360 | 10842 | 242 | 10821 | 1170 | 50 | 4.2735 | |
| gduggal-bwavard | SNP | tv | map_l100_m0_e0 | het | 91.6040 | 98.1446 | 85.8808 | 81.9878 | 7088 | 134 | 7074 | 1163 | 45 | 3.8693 | |
| gduggal-bwavard | SNP | tv | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 16 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | tv | map_l100_m0_e0 | homalt | 98.6984 | 97.6079 | 99.8135 | 64.7875 | 3754 | 92 | 3747 | 7 | 5 | 71.4286 | |
| gduggal-snapfb | INDEL | C1_5 | map_l100_m0_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C1_5 | map_l100_m0_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C1_5 | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C1_5 | map_l100_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C6_15 | map_l100_m0_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C6_15 | map_l100_m0_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C6_15 | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C6_15 | map_l100_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C16_PLUS | map_l100_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C16_PLUS | map_l100_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C16_PLUS | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C16_PLUS | map_l100_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | * | map_l100_m0_e0 | * | 94.9074 | 97.4514 | 92.4929 | 77.7735 | 32004 | 837 | 31615 | 2566 | 141 | 5.4949 | |
| gduggal-bwavard | SNP | * | map_l100_m0_e0 | het | 93.1046 | 97.6656 | 88.9506 | 81.2913 | 20710 | 495 | 20488 | 2545 | 125 | 4.9116 | |
| gduggal-bwavard | SNP | * | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 16 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | * | map_l100_m0_e0 | homalt | 98.4857 | 97.1945 | 99.8116 | 63.6530 | 11294 | 326 | 11127 | 21 | 16 | 76.1905 | |
| gduggal-snapfb | INDEL | I1_5 | map_l100_m0_e0 | * | 94.1894 | 95.7643 | 92.6655 | 86.2889 | 520 | 23 | 518 | 41 | 8 | 19.5122 | |
| gduggal-snapfb | INDEL | I1_5 | map_l100_m0_e0 | het | 92.9242 | 94.4785 | 91.4201 | 83.9430 | 308 | 18 | 309 | 29 | 4 | 13.7931 | |
| gduggal-snapfb | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 71.6418 | 88.8889 | 60.0000 | 93.5484 | 8 | 1 | 6 | 4 | 1 | 25.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l100_m0_e0 | homalt | 97.1337 | 98.0769 | 96.2085 | 88.3875 | 204 | 4 | 203 | 8 | 3 | 37.5000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l100_m0_e0 | * | 80.2812 | 68.9320 | 96.1039 | 84.6307 | 71 | 32 | 74 | 3 | 3 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l100_m0_e0 | het | 85.0633 | 75.0000 | 98.2456 | 77.4704 | 45 | 15 | 56 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 64.2857 | 47.3684 | 100.0000 | 90.9091 | 9 | 10 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | map_l100_m0_e0 | homalt | 79.0698 | 70.8333 | 89.4737 | 91.9831 | 17 | 7 | 17 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | I16_PLUS | map_l100_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 11 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | map_l100_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 8 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | map_l100_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| gduggal-snapfb | SNP | * | map_l100_m0_e0 | * | 96.4309 | 96.3734 | 96.4883 | 71.4997 | 31650 | 1191 | 31653 | 1152 | 513 | 44.5312 | |
| gduggal-snapfb | SNP | * | map_l100_m0_e0 | het | 95.9914 | 97.0526 | 94.9532 | 68.8933 | 20580 | 625 | 20583 | 1094 | 492 | 44.9726 | |
| gduggal-snapfb | SNP | * | map_l100_m0_e0 | hetalt | 93.7500 | 93.7500 | 93.7500 | 91.5344 | 15 | 1 | 15 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | * | map_l100_m0_e0 | homalt | 97.2638 | 95.1377 | 99.4870 | 75.4317 | 11055 | 565 | 11055 | 57 | 21 | 36.8421 | |
| gduggal-snapfb | SNP | ti | map_l100_m0_e0 | * | 96.4920 | 96.2060 | 96.7797 | 70.0719 | 20945 | 826 | 20947 | 697 | 344 | 49.3544 | |
| gduggal-snapfb | SNP | ti | map_l100_m0_e0 | het | 96.0596 | 96.8390 | 95.2927 | 67.8767 | 13541 | 442 | 13543 | 669 | 329 | 49.1779 | |
| gduggal-snapfb | SNP | ti | map_l100_m0_e0 | hetalt | 92.8571 | 92.8571 | 92.8571 | 89.3130 | 13 | 1 | 13 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | map_l100_m0_e0 | homalt | 97.3012 | 95.0733 | 99.6360 | 73.4569 | 7391 | 383 | 7391 | 27 | 15 | 55.5556 | |
| gduggal-snapfb | INDEL | I6_15 | map_l100_m0_e0 | * | 77.4194 | 72.7273 | 82.7586 | 80.5369 | 24 | 9 | 24 | 5 | 4 | 80.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l100_m0_e0 | het | 84.4371 | 88.2353 | 80.9524 | 75.0000 | 15 | 2 | 17 | 4 | 3 | 75.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 60.0000 | 75.0000 | 50.0000 | 80.0000 | 3 | 1 | 1 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l100_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 89.0909 | 6 | 6 | 6 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D16_PLUS | map_l100_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 28 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | map_l100_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 19 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 5 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D1_5 | map_l100_m0_e0 | * | 95.2850 | 95.9444 | 94.6347 | 84.6424 | 828 | 35 | 829 | 47 | 8 | 17.0213 | |
| gduggal-snapfb | INDEL | D1_5 | map_l100_m0_e0 | het | 94.5116 | 95.9391 | 93.1260 | 81.3150 | 567 | 24 | 569 | 42 | 5 | 11.9048 | |