PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
34651-34700 / 86044 show all | |||||||||||||||
| asubramanian-gatk | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.4099 | 9 | 0 | 9 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | map_l100_m0_e0 | homalt | 96.0199 | 92.7885 | 99.4845 | 82.6009 | 193 | 15 | 193 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | SNP | ti | map_l100_m0_e0 | * | 46.8392 | 30.5957 | 99.8501 | 90.3797 | 6661 | 15110 | 6661 | 10 | 5 | 50.0000 | |
| asubramanian-gatk | SNP | ti | map_l100_m0_e0 | het | 49.6427 | 33.0401 | 99.7840 | 91.6649 | 4620 | 9363 | 4620 | 10 | 5 | 50.0000 | |
| asubramanian-gatk | SNP | ti | map_l100_m0_e0 | hetalt | 35.2941 | 21.4286 | 100.0000 | 93.1818 | 3 | 11 | 3 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | map_l100_m0_e0 | homalt | 41.5410 | 26.2156 | 100.0000 | 85.1793 | 2038 | 5736 | 2038 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | map_l100_m0_e0 | * | 43.7760 | 28.0314 | 99.8714 | 92.3134 | 3107 | 7977 | 3107 | 4 | 1 | 25.0000 | |
| asubramanian-gatk | SNP | tv | map_l100_m0_e0 | het | 46.8906 | 30.6425 | 99.8196 | 93.3017 | 2213 | 5009 | 2213 | 4 | 1 | 25.0000 | |
| asubramanian-gatk | SNP | tv | map_l100_m0_e0 | hetalt | 31.5789 | 18.7500 | 100.0000 | 95.2381 | 3 | 13 | 3 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | map_l100_m0_e0 | homalt | 37.6187 | 23.1669 | 100.0000 | 87.8146 | 891 | 2955 | 891 | 0 | 0 | ||
| asubramanian-gatk | SNP | * | map_l100_m0_e0 | * | 45.8193 | 29.7342 | 99.8160 | 91.0946 | 9765 | 23076 | 9765 | 18 | 6 | 33.3333 | |
| asubramanian-gatk | SNP | * | map_l100_m0_e0 | het | 48.7115 | 32.2235 | 99.7518 | 92.2778 | 6833 | 14372 | 6833 | 17 | 6 | 35.2941 | |
| asubramanian-gatk | SNP | * | map_l100_m0_e0 | hetalt | 31.5789 | 18.7500 | 100.0000 | 95.2381 | 3 | 13 | 3 | 0 | 0 | ||
| asubramanian-gatk | SNP | * | map_l100_m0_e0 | homalt | 40.2612 | 25.2065 | 99.9659 | 86.1052 | 2929 | 8691 | 2929 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_l100_m0_e0 | * | 93.0936 | 91.2621 | 95.0000 | 91.5896 | 94 | 9 | 95 | 5 | 1 | 20.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_l100_m0_e0 | het | 92.5620 | 93.3333 | 91.8033 | 92.7467 | 56 | 4 | 56 | 5 | 1 | 20.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 83.6364 | 17 | 2 | 18 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l100_m0_e0 | homalt | 93.3333 | 87.5000 | 100.0000 | 91.1765 | 21 | 3 | 21 | 0 | 0 | ||
| anovak-vg | INDEL | C6_15 | map_l100_m0_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | C6_15 | map_l100_m0_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | C6_15 | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | C6_15 | map_l100_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | C16_PLUS | map_l100_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | C16_PLUS | map_l100_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | C16_PLUS | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | C16_PLUS | map_l100_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | C1_5 | map_l100_m0_e0 | * | 0.0000 | 0.0000 | 50.0000 | 98.4496 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| anovak-vg | INDEL | C1_5 | map_l100_m0_e0 | het | 0.0000 | 0.0000 | 50.0000 | 98.2301 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| anovak-vg | INDEL | C1_5 | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | C1_5 | map_l100_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 0.0000 | 42.8571 | 0.0000 | 0.0000 | 6 | 8 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | map_l100_m0_e0 | homalt | 86.0971 | 79.0698 | 94.4954 | 84.8401 | 204 | 54 | 206 | 12 | 11 | 91.6667 | |
| anovak-vg | INDEL | D6_15 | map_l100_m0_e0 | * | 75.4516 | 68.9320 | 83.3333 | 89.1892 | 71 | 32 | 70 | 14 | 12 | 85.7143 | |
| anovak-vg | INDEL | D6_15 | map_l100_m0_e0 | het | 81.4578 | 81.6667 | 81.2500 | 89.3155 | 49 | 11 | 52 | 12 | 10 | 83.3333 | |
| anovak-vg | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 0.0000 | 21.0526 | 0.0000 | 0.0000 | 4 | 15 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | map_l100_m0_e0 | homalt | 81.8182 | 75.0000 | 90.0000 | 88.7640 | 18 | 6 | 18 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | I16_PLUS | map_l100_m0_e0 | * | 23.5294 | 18.1818 | 33.3333 | 68.4211 | 2 | 9 | 2 | 4 | 4 | 100.0000 | |
| anovak-vg | INDEL | I16_PLUS | map_l100_m0_e0 | het | 22.2222 | 12.5000 | 100.0000 | 80.0000 | 1 | 7 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | I16_PLUS | map_l100_m0_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I16_PLUS | map_l100_m0_e0 | homalt | 0.0000 | 0.0000 | 20.0000 | 64.2857 | 0 | 2 | 1 | 4 | 4 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l100_m0_e0 | * | 52.3810 | 39.2857 | 78.5714 | 92.5532 | 11 | 17 | 11 | 3 | 3 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l100_m0_e0 | het | 58.0645 | 47.3684 | 75.0000 | 90.6977 | 9 | 10 | 9 | 3 | 3 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 57.1429 | 40.0000 | 100.0000 | 96.6102 | 2 | 3 | 2 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | map_l100_m0_e0 | * | 82.9849 | 83.7775 | 82.2072 | 86.7066 | 723 | 140 | 730 | 158 | 62 | 39.2405 | |
| anovak-vg | INDEL | D1_5 | map_l100_m0_e0 | het | 82.2817 | 86.8020 | 78.2090 | 87.2186 | 513 | 78 | 524 | 146 | 51 | 34.9315 | |
| anovak-vg | INDEL | * | map_l100_m0_e0 | * | 72.6539 | 73.0006 | 72.3105 | 87.1262 | 1141 | 422 | 1183 | 453 | 264 | 58.2781 | |
| anovak-vg | INDEL | * | map_l100_m0_e0 | het | 71.5575 | 68.7561 | 74.5968 | 89.0375 | 702 | 319 | 740 | 252 | 75 | 29.7619 | |
| anovak-vg | INDEL | * | map_l100_m0_e0 | hetalt | 0.0000 | 36.3636 | 0.0000 | 0.0000 | 12 | 21 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | * | map_l100_m0_e0 | homalt | 75.5926 | 83.8900 | 68.7888 | 82.3948 | 427 | 82 | 443 | 201 | 189 | 94.0299 | |