PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
34451-34500 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 94.1176 | 12 | 2 | 12 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | map_l100_m0_e0 | homalt | 99.4197 | 99.6124 | 99.2278 | 81.9638 | 257 | 1 | 257 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | C6_15 | map_l100_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C6_15 | map_l100_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C6_15 | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C6_15 | map_l100_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | D16_PLUS | map_l100_m0_e0 | * | 85.2459 | 92.8571 | 78.7879 | 95.5041 | 26 | 2 | 26 | 7 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l100_m0_e0 | het | 89.6047 | 94.7368 | 85.0000 | 96.1538 | 18 | 1 | 17 | 3 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.3846 | 4 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 61.5385 | 80.0000 | 50.0000 | 95.0617 | 4 | 1 | 4 | 4 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | map_l100_m0_e0 | * | 95.6522 | 100.0000 | 91.6667 | 96.1290 | 11 | 0 | 11 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | map_l100_m0_e0 | het | 94.1176 | 100.0000 | 88.8889 | 94.6108 | 8 | 0 | 8 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.0000 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I16_PLUS | map_l100_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.4962 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I1_5 | map_l100_m0_e0 | * | 98.6285 | 99.0792 | 98.1818 | 85.0543 | 538 | 5 | 540 | 10 | 3 | 30.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l100_m0_e0 | het | 98.3211 | 98.4663 | 98.1763 | 86.9289 | 321 | 5 | 323 | 6 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I1_5 | map_l100_m0_e0 | homalt | 99.0476 | 100.0000 | 98.1132 | 79.0099 | 208 | 0 | 208 | 4 | 3 | 75.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | map_l100_m0_e0 | * | 96.6184 | 97.0874 | 96.1538 | 88.7931 | 100 | 3 | 100 | 4 | 1 | 25.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | map_l100_m0_e0 | het | 95.9350 | 98.3333 | 93.6508 | 89.9200 | 59 | 1 | 59 | 4 | 1 | 25.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 81.8182 | 18 | 1 | 18 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_l100_m0_e0 | homalt | 97.8723 | 95.8333 | 100.0000 | 88.7255 | 23 | 1 | 23 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | C16_PLUS | map_l100_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C16_PLUS | map_l100_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C16_PLUS | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C16_PLUS | map_l100_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C1_5 | map_l100_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C1_5 | map_l100_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C1_5 | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C1_5 | map_l100_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| asubramanian-gatk | INDEL | C16_PLUS | map_l100_m0_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | C16_PLUS | map_l100_m0_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | C16_PLUS | map_l100_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | C16_PLUS | map_l100_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| astatham-gatk | SNP | tv | map_l100_m0_e0 | * | 93.1039 | 87.3962 | 99.6092 | 73.8497 | 9687 | 1397 | 9686 | 38 | 11 | 28.9474 | |
| astatham-gatk | SNP | tv | map_l100_m0_e0 | het | 89.5033 | 81.3487 | 99.4750 | 78.3064 | 5875 | 1347 | 5874 | 31 | 7 | 22.5806 | |
| astatham-gatk | SNP | tv | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 68.0000 | 16 | 0 | 16 | 0 | 0 | ||
| astatham-gatk | SNP | tv | map_l100_m0_e0 | homalt | 99.2548 | 98.6999 | 99.8159 | 61.6440 | 3796 | 50 | 3796 | 7 | 4 | 57.1429 | |
| asubramanian-gatk | INDEL | * | map_l100_m0_e0 | * | 91.6436 | 88.3557 | 95.1857 | 96.6934 | 1381 | 182 | 1384 | 70 | 8 | 11.4286 | |
| asubramanian-gatk | INDEL | * | map_l100_m0_e0 | het | 89.7495 | 86.5818 | 93.1579 | 91.0990 | 884 | 137 | 885 | 65 | 6 | 9.2308 | |
| asubramanian-gatk | INDEL | * | map_l100_m0_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 91.8159 | 30 | 3 | 32 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | map_l100_m0_e0 | homalt | 95.2090 | 91.7485 | 98.9407 | 86.3268 | 467 | 42 | 467 | 5 | 2 | 40.0000 | |
| asubramanian-gatk | INDEL | C6_15 | map_l100_m0_e0 | * | 0.0000 | 0.0000 | 90.0000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C6_15 | map_l100_m0_e0 | het | 0.0000 | 0.0000 | 87.5000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C6_15 | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| asubramanian-gatk | INDEL | C6_15 | map_l100_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | D16_PLUS | map_l100_m0_e0 | * | 80.0000 | 78.5714 | 81.4815 | 97.3188 | 22 | 6 | 22 | 5 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l100_m0_e0 | het | 78.3582 | 78.9474 | 77.7778 | 97.5577 | 15 | 4 | 14 | 4 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l100_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 92.5926 | 3 | 1 | 4 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 80.0000 | 80.0000 | 80.0000 | 97.6852 | 4 | 1 | 4 | 1 | 0 | 0.0000 | |