PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
34151-34200 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | C1_5 | map_l100_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | C1_5 | map_l100_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | * | map_l100_m0_e0 | * | 97.4296 | 96.9290 | 97.9355 | 98.6839 | 1515 | 48 | 1518 | 32 | 12 | 37.5000 | |
| rpoplin-dv42 | INDEL | * | map_l100_m0_e0 | het | 97.0417 | 96.2782 | 97.8175 | 85.4440 | 983 | 38 | 986 | 22 | 6 | 27.2727 | |
| rpoplin-dv42 | INDEL | * | map_l100_m0_e0 | hetalt | 93.9394 | 93.9394 | 93.9394 | 92.4485 | 31 | 2 | 31 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l100_m0_e0 | homalt | 98.4283 | 98.4283 | 98.4283 | 84.0788 | 501 | 8 | 501 | 8 | 6 | 75.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l100_m0_e0 | * | 98.0718 | 98.1584 | 97.9853 | 81.8544 | 533 | 10 | 535 | 11 | 1 | 9.0909 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l100_m0_e0 | het | 97.4050 | 97.5460 | 97.2644 | 82.8646 | 318 | 8 | 320 | 9 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 94.1176 | 88.8889 | 100.0000 | 93.2203 | 8 | 1 | 8 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I1_5 | map_l100_m0_e0 | homalt | 99.2806 | 99.5192 | 99.0431 | 78.4758 | 207 | 1 | 207 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m0_e0 | * | 98.1543 | 97.7901 | 98.5213 | 84.3687 | 531 | 12 | 533 | 8 | 3 | 37.5000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m0_e0 | het | 97.8290 | 96.6258 | 99.0625 | 85.1232 | 315 | 11 | 317 | 3 | 1 | 33.3333 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 90.0000 | 100.0000 | 81.8182 | 94.7368 | 9 | 0 | 9 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m0_e0 | homalt | 99.0431 | 99.5192 | 98.5714 | 80.9264 | 207 | 1 | 207 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_l100_m0_e0 | * | 90.9091 | 90.9091 | 90.9091 | 75.0000 | 10 | 1 | 10 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_l100_m0_e0 | het | 94.1176 | 100.0000 | 88.8889 | 66.6667 | 8 | 0 | 8 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.3333 | 1 | 0 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | map_l100_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 90.9091 | 1 | 1 | 1 | 0 | 0 | ||
| rpoplin-dv42 | SNP | * | map_l100_m0_e0 | * | 99.0394 | 98.8947 | 99.1845 | 66.6640 | 32478 | 363 | 32474 | 267 | 146 | 54.6816 | |
| rpoplin-dv42 | SNP | * | map_l100_m0_e0 | het | 98.8725 | 98.8493 | 98.8958 | 68.4376 | 20961 | 244 | 20957 | 234 | 116 | 49.5726 | |
| rpoplin-dv42 | SNP | * | map_l100_m0_e0 | hetalt | 91.4286 | 100.0000 | 84.2105 | 84.6774 | 16 | 0 | 16 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | * | map_l100_m0_e0 | homalt | 99.3564 | 98.9759 | 99.7398 | 62.7443 | 11501 | 119 | 11501 | 30 | 27 | 90.0000 | |
| rpoplin-dv42 | SNP | tv | map_l100_m0_e0 | * | 98.7643 | 98.7911 | 98.7375 | 67.3276 | 10950 | 134 | 10949 | 140 | 63 | 45.0000 | |
| rpoplin-dv42 | SNP | tv | map_l100_m0_e0 | het | 98.5640 | 98.8507 | 98.2789 | 68.7061 | 7139 | 83 | 7138 | 125 | 50 | 40.0000 | |
| rpoplin-dv42 | SNP | tv | map_l100_m0_e0 | hetalt | 91.4286 | 100.0000 | 84.2105 | 84.6774 | 16 | 0 | 16 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l100_m0_e0 | homalt | 99.1768 | 98.6739 | 99.6848 | 64.1086 | 3795 | 51 | 3795 | 12 | 10 | 83.3333 | |
| rpoplin-dv42 | SNP | ti | map_l100_m0_e0 | * | 99.1759 | 98.9481 | 99.4047 | 66.3363 | 21542 | 229 | 21539 | 129 | 85 | 65.8915 | |
| rpoplin-dv42 | SNP | ti | map_l100_m0_e0 | het | 99.0327 | 98.8486 | 99.2174 | 68.2957 | 13822 | 161 | 13819 | 109 | 66 | 60.5505 | |
| rpoplin-dv42 | SNP | ti | map_l100_m0_e0 | hetalt | 93.3333 | 100.0000 | 87.5000 | 82.4176 | 14 | 0 | 14 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | SNP | ti | map_l100_m0_e0 | homalt | 99.4451 | 99.1253 | 99.7670 | 62.0330 | 7706 | 68 | 7706 | 18 | 17 | 94.4444 | |
| rpoplin-dv42 | INDEL | C6_15 | map_l100_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C6_15 | map_l100_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C6_15 | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C6_15 | map_l100_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m0_e0 | * | 86.2745 | 78.5714 | 95.6522 | 93.1751 | 22 | 6 | 22 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m0_e0 | het | 88.2353 | 78.9474 | 100.0000 | 93.3921 | 15 | 4 | 15 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 82.3529 | 3 | 1 | 3 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 80.0000 | 80.0000 | 80.0000 | 94.6237 | 4 | 1 | 4 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m0_e0 | * | 98.0857 | 97.9143 | 98.2578 | 84.7960 | 845 | 18 | 846 | 15 | 6 | 40.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m0_e0 | het | 97.7076 | 97.2927 | 98.1261 | 84.3425 | 575 | 16 | 576 | 11 | 2 | 18.1818 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 96.2963 | 92.8571 | 100.0000 | 95.4064 | 13 | 1 | 13 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m0_e0 | homalt | 99.0366 | 99.6124 | 98.4674 | 83.9975 | 257 | 1 | 257 | 4 | 4 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l100_m0_e0 | * | 95.6522 | 96.1165 | 95.1923 | 89.3443 | 99 | 4 | 99 | 5 | 1 | 20.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l100_m0_e0 | het | 95.1613 | 98.3333 | 92.1875 | 89.6272 | 59 | 1 | 59 | 5 | 1 | 20.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 83.1683 | 17 | 2 | 17 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | map_l100_m0_e0 | homalt | 97.8723 | 95.8333 | 100.0000 | 91.0853 | 23 | 1 | 23 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | map_l100_m0_e0 | * | 81.3559 | 72.7273 | 92.3077 | 91.0653 | 24 | 9 | 24 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l100_m0_e0 | het | 73.3333 | 64.7059 | 84.6154 | 91.5584 | 11 | 6 | 11 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.5714 | 4 | 0 | 4 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | map_l100_m0_e0 | homalt | 85.7143 | 75.0000 | 100.0000 | 91.1765 | 9 | 3 | 9 | 0 | 0 | ||