PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
33801-33850 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | I6_15 | map_l100_m0_e0 | * | 88.7845 | 84.8485 | 93.1034 | 92.0330 | 28 | 5 | 27 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l100_m0_e0 | het | 82.2134 | 76.4706 | 88.8889 | 93.3824 | 13 | 4 | 16 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 4 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | map_l100_m0_e0 | homalt | 95.6522 | 91.6667 | 100.0000 | 88.0435 | 11 | 1 | 11 | 0 | 0 | ||
| cchapple-custom | SNP | * | map_l100_m0_e0 | * | 96.7025 | 96.7997 | 96.6055 | 71.5936 | 31790 | 1051 | 31789 | 1117 | 256 | 22.9185 | |
| cchapple-custom | SNP | * | map_l100_m0_e0 | het | 95.9513 | 97.0667 | 94.8612 | 75.7604 | 20583 | 622 | 20601 | 1116 | 255 | 22.8495 | |
| cchapple-custom | SNP | * | map_l100_m0_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 16 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | * | map_l100_m0_e0 | homalt | 98.1150 | 96.3081 | 99.9911 | 57.3704 | 11191 | 429 | 11188 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l100_m0_e0 | * | 96.5832 | 96.6851 | 96.4815 | 84.1223 | 525 | 18 | 521 | 19 | 5 | 26.3158 | |
| cchapple-custom | INDEL | I1_5 | map_l100_m0_e0 | het | 95.6165 | 96.0123 | 95.2239 | 86.1513 | 313 | 13 | 319 | 16 | 3 | 18.7500 | |
| cchapple-custom | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 0.0000 | 88.8889 | 0.0000 | 0.0000 | 8 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | map_l100_m0_e0 | homalt | 98.3062 | 98.0769 | 98.5366 | 79.1242 | 204 | 4 | 202 | 3 | 2 | 66.6667 | |
| cchapple-custom | INDEL | C6_15 | map_l100_m0_e0 | * | 0.0000 | 0.0000 | 95.8333 | 0 | 0 | 0 | 3 | 1 | 33.3333 | ||
| cchapple-custom | INDEL | C6_15 | map_l100_m0_e0 | het | 0.0000 | 0.0000 | 94.7368 | 0 | 0 | 0 | 3 | 1 | 33.3333 | ||
| cchapple-custom | INDEL | C6_15 | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | C6_15 | map_l100_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | * | map_l100_m0_e0 | * | 90.4000 | 93.9859 | 87.0777 | 93.2660 | 1469 | 94 | 1469 | 218 | 66 | 30.2752 | |
| ghariani-varprowl | INDEL | * | map_l100_m0_e0 | het | 89.7886 | 97.7473 | 83.0283 | 91.0144 | 998 | 23 | 998 | 204 | 61 | 29.9020 | |
| ghariani-varprowl | INDEL | * | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 33 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | * | map_l100_m0_e0 | homalt | 94.7686 | 92.5344 | 97.1134 | 82.2993 | 471 | 38 | 471 | 14 | 5 | 35.7143 | |
| gduggal-snapvard | SNP | ti | map_l100_m0_e0 | * | 92.9211 | 95.6915 | 90.3065 | 76.7821 | 20833 | 938 | 20654 | 2217 | 198 | 8.9310 | |
| gduggal-snapvard | SNP | ti | map_l100_m0_e0 | het | 90.6971 | 96.0523 | 85.9075 | 80.2123 | 13431 | 552 | 13338 | 2188 | 175 | 7.9982 | |
| gduggal-snapvard | SNP | ti | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 14 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | ti | map_l100_m0_e0 | homalt | 97.3605 | 95.2148 | 99.6052 | 63.3538 | 7402 | 372 | 7316 | 29 | 23 | 79.3103 | |
| gduggal-snapvard | SNP | tv | map_l100_m0_e0 | * | 91.8069 | 96.6258 | 87.4458 | 78.2460 | 10710 | 374 | 10685 | 1534 | 85 | 5.5411 | |
| gduggal-snapvard | SNP | tv | map_l100_m0_e0 | het | 88.9755 | 97.1199 | 82.0913 | 81.3435 | 7014 | 208 | 6995 | 1526 | 80 | 5.2425 | |
| gduggal-snapvard | SNP | tv | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 16 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | tv | map_l100_m0_e0 | homalt | 97.9071 | 96.0998 | 99.7837 | 64.7675 | 3696 | 150 | 3690 | 8 | 5 | 62.5000 | |
| ghariani-varprowl | INDEL | C1_5 | map_l100_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C1_5 | map_l100_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C1_5 | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C1_5 | map_l100_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C6_15 | map_l100_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C6_15 | map_l100_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C6_15 | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C6_15 | map_l100_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C16_PLUS | map_l100_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C16_PLUS | map_l100_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C16_PLUS | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C16_PLUS | map_l100_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I6_15 | map_l100_m0_e0 | * | 57.3585 | 57.5758 | 57.1429 | 81.9063 | 19 | 14 | 64 | 48 | 36 | 75.0000 | |
| gduggal-snapvard | INDEL | I6_15 | map_l100_m0_e0 | het | 68.5015 | 94.1176 | 53.8462 | 81.9757 | 16 | 1 | 56 | 48 | 36 | 75.0000 | |
| gduggal-snapvard | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 0.0000 | 50.0000 | 0.0000 | 0.0000 | 2 | 2 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | map_l100_m0_e0 | homalt | 15.3846 | 8.3333 | 100.0000 | 80.9524 | 1 | 11 | 8 | 0 | 0 | ||
| gduggal-snapvard | SNP | * | map_l100_m0_e0 | * | 92.6283 | 96.0476 | 89.4441 | 77.2407 | 31543 | 1298 | 31148 | 3676 | 276 | 7.5082 | |
| gduggal-snapvard | SNP | * | map_l100_m0_e0 | het | 90.2047 | 96.4159 | 84.7453 | 80.5659 | 20445 | 760 | 20216 | 3639 | 248 | 6.8151 | |
| gduggal-snapvard | SNP | * | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 16 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | * | map_l100_m0_e0 | homalt | 97.5410 | 95.5077 | 99.6627 | 63.7532 | 11098 | 522 | 10932 | 37 | 28 | 75.6757 | |
| gduggal-snapplat | SNP | * | map_l100_m0_e0 | * | 93.1162 | 90.6854 | 95.6808 | 80.1096 | 29782 | 3059 | 29795 | 1345 | 754 | 56.0595 | |
| gduggal-snapplat | SNP | * | map_l100_m0_e0 | het | 93.0063 | 92.3697 | 93.6518 | 83.5542 | 19587 | 1618 | 19606 | 1329 | 738 | 55.5305 | |