PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
33651-33700 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | C6_15 | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | C6_15 | map_l100_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | SNP | ti | map_l100_m0_e0 | * | 96.8619 | 96.6377 | 97.0872 | 70.6515 | 21039 | 732 | 21032 | 631 | 173 | 27.4168 | |
| cchapple-custom | SNP | ti | map_l100_m0_e0 | het | 96.2084 | 96.8676 | 95.5581 | 74.9532 | 13545 | 438 | 13553 | 630 | 172 | 27.3016 | |
| cchapple-custom | SNP | ti | map_l100_m0_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 14 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | map_l100_m0_e0 | homalt | 98.0662 | 96.2182 | 99.9866 | 56.4787 | 7480 | 294 | 7479 | 1 | 1 | 100.0000 | |
| ciseli-custom | SNP | * | map_l100_m0_e0 | * | 81.1632 | 76.8673 | 85.9677 | 74.4366 | 25244 | 7597 | 25198 | 4113 | 1141 | 27.7413 | |
| ciseli-custom | SNP | * | map_l100_m0_e0 | het | 77.1628 | 71.2049 | 84.2088 | 78.9054 | 15099 | 6106 | 15086 | 2829 | 99 | 3.4995 | |
| ciseli-custom | SNP | * | map_l100_m0_e0 | hetalt | 66.6667 | 56.2500 | 81.8182 | 78.0000 | 9 | 7 | 9 | 2 | 1 | 50.0000 | |
| ciseli-custom | SNP | * | map_l100_m0_e0 | homalt | 87.9778 | 87.2289 | 88.7396 | 61.6447 | 10136 | 1484 | 10103 | 1282 | 1041 | 81.2012 | |
| ciseli-custom | INDEL | I16_PLUS | map_l100_m0_e0 | * | 0.0000 | 0.0000 | 98.1132 | 0 | 11 | 0 | 1 | 1 | 100.0000 | ||
| ciseli-custom | INDEL | I16_PLUS | map_l100_m0_e0 | het | 0.0000 | 100.0000 | 0 | 8 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | I16_PLUS | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | I16_PLUS | map_l100_m0_e0 | homalt | 0.0000 | 0.0000 | 92.8571 | 0 | 2 | 0 | 1 | 1 | 100.0000 | ||
| ciseli-custom | INDEL | I1_5 | map_l100_m0_e0 | * | 58.4054 | 52.3020 | 66.1215 | 87.8959 | 284 | 259 | 283 | 145 | 118 | 81.3793 | |
| ciseli-custom | INDEL | I1_5 | map_l100_m0_e0 | het | 63.7487 | 65.6442 | 61.9597 | 88.3791 | 214 | 112 | 215 | 132 | 108 | 81.8182 | |
| ciseli-custom | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | I1_5 | map_l100_m0_e0 | homalt | 48.0468 | 33.6538 | 83.9506 | 85.2727 | 70 | 138 | 68 | 13 | 10 | 76.9231 | |
| ciseli-custom | INDEL | I6_15 | map_l100_m0_e0 | * | 24.3902 | 15.1515 | 62.5000 | 94.2446 | 5 | 28 | 5 | 3 | 2 | 66.6667 | |
| ciseli-custom | INDEL | I6_15 | map_l100_m0_e0 | het | 34.7826 | 23.5294 | 66.6667 | 93.8776 | 4 | 13 | 4 | 2 | 2 | 100.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | I6_15 | map_l100_m0_e0 | homalt | 14.2857 | 8.3333 | 50.0000 | 95.1220 | 1 | 11 | 1 | 1 | 0 | 0.0000 | |
| ciseli-custom | SNP | tv | map_l100_m0_e0 | * | 78.9086 | 74.1158 | 84.3641 | 75.9006 | 8215 | 2869 | 8212 | 1522 | 391 | 25.6899 | |
| ciseli-custom | SNP | tv | map_l100_m0_e0 | het | 74.3908 | 68.0559 | 82.0260 | 79.9973 | 4915 | 2307 | 4915 | 1077 | 42 | 3.8997 | |
| ciseli-custom | SNP | tv | map_l100_m0_e0 | hetalt | 66.6667 | 56.2500 | 81.8182 | 78.0000 | 9 | 7 | 9 | 2 | 1 | 50.0000 | |
| ciseli-custom | SNP | tv | map_l100_m0_e0 | homalt | 86.8291 | 85.5694 | 88.1265 | 64.0732 | 3291 | 555 | 3288 | 443 | 348 | 78.5553 | |
| ckim-dragen | INDEL | * | map_l100_m0_e0 | * | 96.2468 | 96.9930 | 95.5120 | 87.5276 | 1516 | 47 | 1511 | 71 | 10 | 14.0845 | |
| ckim-dragen | INDEL | * | map_l100_m0_e0 | het | 95.6303 | 96.7679 | 94.5192 | 88.5902 | 988 | 33 | 983 | 57 | 4 | 7.0175 | |
| ckim-dragen | INDEL | * | map_l100_m0_e0 | hetalt | 93.5484 | 87.8788 | 100.0000 | 90.0662 | 29 | 4 | 30 | 0 | 0 | ||
| ckim-dragen | INDEL | * | map_l100_m0_e0 | homalt | 97.6490 | 98.0354 | 97.2656 | 84.3281 | 499 | 10 | 498 | 14 | 6 | 42.8571 | |
| ciseli-custom | SNP | ti | map_l100_m0_e0 | * | 82.2845 | 78.2555 | 86.7509 | 73.7443 | 17037 | 4734 | 17024 | 2600 | 753 | 28.9615 | |
| ciseli-custom | SNP | ti | map_l100_m0_e0 | het | 78.5726 | 72.8313 | 85.2966 | 78.4054 | 10184 | 3799 | 10181 | 1755 | 57 | 3.2479 | |
| ciseli-custom | SNP | ti | map_l100_m0_e0 | hetalt | 69.5652 | 57.1429 | 88.8889 | 73.5294 | 8 | 6 | 8 | 1 | 1 | 100.0000 | |
| ciseli-custom | SNP | ti | map_l100_m0_e0 | homalt | 88.5269 | 88.0499 | 89.0090 | 60.4888 | 6845 | 929 | 6835 | 844 | 695 | 82.3460 | |
| ciseli-custom | INDEL | D6_15 | map_l100_m0_e0 | * | 52.0249 | 48.5437 | 56.0440 | 91.5428 | 50 | 53 | 51 | 40 | 23 | 57.5000 | |
| ciseli-custom | INDEL | D6_15 | map_l100_m0_e0 | het | 58.7127 | 55.0000 | 62.9630 | 92.9412 | 33 | 27 | 34 | 20 | 4 | 20.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 19 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | D6_15 | map_l100_m0_e0 | homalt | 55.7377 | 70.8333 | 45.9459 | 88.1029 | 17 | 7 | 17 | 20 | 19 | 95.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l100_m0_e0 | * | 95.6522 | 100.0000 | 91.6667 | 97.0732 | 11 | 0 | 11 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l100_m0_e0 | het | 94.1176 | 100.0000 | 88.8889 | 96.0177 | 8 | 0 | 8 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.3077 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | map_l100_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.8304 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | map_l100_m0_e0 | * | 95.3440 | 98.3778 | 92.4918 | 89.2439 | 849 | 14 | 850 | 69 | 5 | 7.2464 | |
| ckim-gatk | INDEL | D1_5 | map_l100_m0_e0 | het | 94.1262 | 98.8156 | 89.8618 | 90.2908 | 584 | 7 | 585 | 66 | 3 | 4.5455 | |
| ckim-gatk | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 78.2609 | 64.2857 | 100.0000 | 95.5224 | 9 | 5 | 9 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | map_l100_m0_e0 | homalt | 99.0329 | 99.2248 | 98.8417 | 84.1880 | 256 | 2 | 256 | 3 | 2 | 66.6667 | |
| ckim-gatk | INDEL | D6_15 | map_l100_m0_e0 | * | 94.7867 | 97.0874 | 92.5926 | 91.6731 | 100 | 3 | 100 | 8 | 1 | 12.5000 | |
| ckim-gatk | INDEL | D6_15 | map_l100_m0_e0 | het | 92.9134 | 98.3333 | 88.0597 | 92.8875 | 59 | 1 | 59 | 8 | 1 | 12.5000 | |
| ckim-gatk | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 83.3333 | 18 | 1 | 18 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | map_l100_m0_e0 | homalt | 97.8723 | 95.8333 | 100.0000 | 90.6883 | 23 | 1 | 23 | 0 | 0 | ||