PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
33551-33600 / 86044 show all | |||||||||||||||
| ckim-gatk | SNP | tv | map_l100_m1_e0 | hetalt | 78.2609 | 65.8537 | 96.4286 | 89.0625 | 27 | 14 | 27 | 1 | 1 | 100.0000 | |
| ckim-gatk | SNP | tv | map_l100_m1_e0 | homalt | 82.0884 | 69.6340 | 99.9682 | 68.5726 | 6297 | 2746 | 6297 | 2 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l100_m1_e0 | * | 65.8098 | 50.0000 | 96.2406 | 83.4577 | 129 | 129 | 128 | 5 | 4 | 80.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l100_m1_e0 | het | 60.9393 | 45.2381 | 93.3333 | 89.3993 | 57 | 69 | 56 | 4 | 3 | 75.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 77.8761 | 64.7059 | 97.7778 | 67.3913 | 44 | 24 | 44 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l100_m1_e0 | homalt | 60.8696 | 43.7500 | 100.0000 | 72.0000 | 28 | 36 | 28 | 0 | 0 | ||
| ckim-isaac | INDEL | C1_5 | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C1_5 | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C1_5 | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | C1_5 | map_l100_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C6_15 | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C6_15 | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C6_15 | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C6_15 | map_l100_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | I16_PLUS | map_l100_m1_e0 | * | 90.5660 | 92.3077 | 88.8889 | 93.8215 | 24 | 2 | 24 | 3 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_l100_m1_e0 | het | 91.8919 | 94.4444 | 89.4737 | 93.6242 | 17 | 1 | 17 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_l100_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 92.3077 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 90.9091 | 100.0000 | 83.3333 | 94.6903 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | C1_5 | map_l100_m1_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | C1_5 | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C1_5 | map_l100_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | C1_5 | map_l100_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | D1_5 | map_l100_m1_e0 | het | 96.9291 | 98.0149 | 95.8671 | 85.7209 | 1185 | 24 | 1183 | 51 | 4 | 7.8431 | |
| ckim-dragen | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 93.1818 | 87.2340 | 100.0000 | 90.0243 | 41 | 6 | 41 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | map_l100_m1_e0 | homalt | 99.1508 | 98.6486 | 99.6581 | 83.0336 | 584 | 8 | 583 | 2 | 2 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l100_m1_e0 | * | 96.6732 | 95.7364 | 97.6285 | 88.1886 | 247 | 11 | 247 | 6 | 1 | 16.6667 | |
| ckim-dragen | INDEL | D6_15 | map_l100_m1_e0 | het | 97.2549 | 98.4127 | 96.1240 | 90.5564 | 124 | 2 | 124 | 5 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 95.3846 | 91.1765 | 100.0000 | 69.7561 | 62 | 6 | 62 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | map_l100_m1_e0 | homalt | 96.8254 | 95.3125 | 98.3871 | 89.1419 | 61 | 3 | 61 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | C16_PLUS | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C16_PLUS | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C16_PLUS | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C16_PLUS | map_l100_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | I1_5 | map_l100_m1_e0 | * | 97.1890 | 96.8633 | 97.5169 | 84.0762 | 1297 | 42 | 1296 | 33 | 8 | 24.2424 | |
| ckim-dragen | INDEL | I1_5 | map_l100_m1_e0 | het | 96.1240 | 95.7529 | 96.4981 | 85.9049 | 744 | 33 | 744 | 27 | 3 | 11.1111 | |
| ckim-dragen | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 96.4706 | 93.1818 | 100.0000 | 87.5758 | 41 | 3 | 41 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | map_l100_m1_e0 | homalt | 98.8406 | 98.8417 | 98.8395 | 79.6936 | 512 | 6 | 511 | 6 | 5 | 83.3333 | |
| ckim-dragen | INDEL | D16_PLUS | map_l100_m1_e0 | * | 82.7225 | 90.8046 | 75.9615 | 95.2140 | 79 | 8 | 79 | 25 | 4 | 16.0000 | |
| ckim-dragen | INDEL | D16_PLUS | map_l100_m1_e0 | het | 80.0532 | 93.4783 | 70.0000 | 96.1710 | 43 | 3 | 42 | 18 | 2 | 11.1111 | |
| ckim-dragen | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 76.7677 | 22 | 4 | 23 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 77.7778 | 93.3333 | 66.6667 | 95.8580 | 14 | 1 | 14 | 7 | 2 | 28.5714 | |
| ckim-dragen | INDEL | D1_5 | map_l100_m1_e0 | * | 97.5455 | 97.9437 | 97.1505 | 85.1212 | 1810 | 38 | 1807 | 53 | 6 | 11.3208 | |
| ckim-dragen | INDEL | D16_PLUS | map_l100_m0_e0 | * | 72.7273 | 85.7143 | 63.1579 | 96.7438 | 24 | 4 | 24 | 14 | 1 | 7.1429 | |
| ckim-dragen | INDEL | D16_PLUS | map_l100_m0_e0 | het | 74.6228 | 89.4737 | 64.0000 | 97.0449 | 17 | 2 | 16 | 9 | 1 | 11.1111 | |
| ckim-dragen | INDEL | D16_PLUS | map_l100_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 90.4762 | 3 | 1 | 4 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 57.1429 | 80.0000 | 44.4444 | 96.7742 | 4 | 1 | 4 | 5 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D1_5 | map_l100_m0_e0 | * | 96.8796 | 97.3349 | 96.4286 | 86.1120 | 840 | 23 | 837 | 31 | 4 | 12.9032 | |
| ckim-dragen | INDEL | D1_5 | map_l100_m0_e0 | het | 96.3955 | 97.6311 | 95.1907 | 86.7502 | 577 | 14 | 574 | 29 | 2 | 6.8966 | |
| ckim-dragen | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 88.0000 | 78.5714 | 100.0000 | 93.5294 | 11 | 3 | 11 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | map_l100_m0_e0 | homalt | 98.4375 | 97.6744 | 99.2126 | 83.3878 | 252 | 6 | 252 | 2 | 2 | 100.0000 | |