PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
33451-33500 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | C6_15 | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | C6_15 | map_l100_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | SNP | ti | map_l100_m1_e0 | * | 97.7073 | 97.6424 | 97.7722 | 66.9622 | 46801 | 1130 | 46783 | 1066 | 270 | 25.3283 | |
| cchapple-custom | SNP | ti | map_l100_m1_e0 | het | 97.1277 | 97.7690 | 96.4947 | 71.3539 | 29274 | 668 | 29290 | 1064 | 268 | 25.1880 | |
| cchapple-custom | SNP | ti | map_l100_m1_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 29 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | map_l100_m1_e0 | homalt | 98.6915 | 97.4276 | 99.9886 | 54.9898 | 17498 | 462 | 17493 | 2 | 2 | 100.0000 | |
| ciseli-custom | INDEL | D1_5 | map_l100_m1_e0 | * | 79.6470 | 76.1905 | 83.4320 | 87.8636 | 1408 | 440 | 1410 | 280 | 137 | 48.9286 | |
| ciseli-custom | INDEL | D1_5 | map_l100_m1_e0 | het | 79.1153 | 74.3590 | 84.5216 | 89.5868 | 899 | 310 | 901 | 165 | 39 | 23.6364 | |
| ciseli-custom | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 0.0000 | 4.2553 | 0.0000 | 0.0000 | 2 | 45 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | map_l100_m1_e0 | homalt | 83.5566 | 85.6419 | 81.5705 | 83.0803 | 507 | 85 | 509 | 115 | 98 | 85.2174 | |
| ciseli-custom | INDEL | C1_5 | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 9.0909 | 97.3430 | 0 | 0 | 2 | 20 | 4 | 20.0000 | |
| ciseli-custom | INDEL | C1_5 | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 33.3333 | 99.0476 | 0 | 0 | 1 | 2 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C1_5 | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | C1_5 | map_l100_m1_e0 | homalt | 0.0000 | 0.0000 | 5.2632 | 96.2963 | 0 | 0 | 1 | 18 | 4 | 22.2222 | |
| ckim-dragen | SNP | ti | map_l100_m1_e0 | * | 98.6835 | 99.2948 | 98.0797 | 66.8879 | 47593 | 338 | 47601 | 932 | 106 | 11.3734 | |
| ckim-dragen | SNP | ti | map_l100_m1_e0 | het | 98.1230 | 99.2485 | 97.0227 | 71.3768 | 29717 | 225 | 29720 | 912 | 87 | 9.5395 | |
| ckim-dragen | SNP | ti | map_l100_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 76.0331 | 29 | 0 | 29 | 0 | 0 | ||
| ckim-dragen | SNP | ti | map_l100_m1_e0 | homalt | 99.6288 | 99.3708 | 99.8881 | 54.6776 | 17847 | 113 | 17852 | 20 | 19 | 95.0000 | |
| ckim-gatk | INDEL | C1_5 | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C1_5 | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C1_5 | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C1_5 | map_l100_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | SNP | * | map_l100_m1_e0 | * | 98.6742 | 99.2901 | 98.0660 | 67.7530 | 71889 | 514 | 71900 | 1418 | 151 | 10.6488 | |
| ckim-dragen | SNP | * | map_l100_m1_e0 | het | 98.1047 | 99.2152 | 97.0189 | 72.1356 | 45003 | 356 | 45009 | 1383 | 119 | 8.6045 | |
| ckim-dragen | SNP | * | map_l100_m1_e0 | hetalt | 98.7654 | 97.5610 | 100.0000 | 78.7234 | 40 | 1 | 40 | 0 | 0 | ||
| ckim-dragen | SNP | * | map_l100_m1_e0 | homalt | 99.6437 | 99.4186 | 99.8698 | 55.6951 | 26846 | 157 | 26851 | 35 | 32 | 91.4286 | |
| ckim-gatk | INDEL | * | map_l100_m1_e0 | * | 97.0622 | 98.4384 | 95.7240 | 88.3725 | 3530 | 56 | 3537 | 158 | 20 | 12.6582 | |
| ckim-gatk | INDEL | * | map_l100_m1_e0 | het | 96.1061 | 98.6130 | 93.7235 | 89.8156 | 2204 | 31 | 2210 | 148 | 14 | 9.4595 | |
| ckim-gatk | INDEL | * | map_l100_m1_e0 | hetalt | 93.5622 | 87.9032 | 100.0000 | 86.7947 | 109 | 15 | 110 | 0 | 0 | ||
| ckim-gatk | INDEL | * | map_l100_m1_e0 | homalt | 99.1850 | 99.1850 | 99.1850 | 84.2531 | 1217 | 10 | 1217 | 10 | 6 | 60.0000 | |
| ckim-gatk | INDEL | C16_PLUS | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C16_PLUS | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C16_PLUS | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C16_PLUS | map_l100_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | I6_15 | map_l100_m1_e0 | * | 96.9163 | 96.4912 | 97.3451 | 87.7838 | 110 | 4 | 110 | 3 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I6_15 | map_l100_m1_e0 | het | 96.6102 | 96.6102 | 96.6102 | 89.1144 | 57 | 2 | 57 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 81.1321 | 20 | 2 | 20 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | map_l100_m1_e0 | homalt | 98.5075 | 100.0000 | 97.0588 | 87.7256 | 33 | 0 | 33 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | C6_15 | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C6_15 | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C6_15 | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | C6_15 | map_l100_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | SNP | tv | map_l100_m1_e0 | * | 98.6576 | 99.2817 | 98.0414 | 69.3325 | 24325 | 176 | 24328 | 486 | 45 | 9.2593 | |
| ckim-dragen | SNP | tv | map_l100_m1_e0 | het | 98.0692 | 99.1503 | 97.0114 | 73.5010 | 15286 | 131 | 15289 | 471 | 32 | 6.7941 | |
| ckim-dragen | SNP | tv | map_l100_m1_e0 | hetalt | 98.7654 | 97.5610 | 100.0000 | 78.7234 | 40 | 1 | 40 | 0 | 0 | ||
| ckim-dragen | SNP | tv | map_l100_m1_e0 | homalt | 99.6733 | 99.5134 | 99.8336 | 57.5832 | 8999 | 44 | 8999 | 15 | 13 | 86.6667 | |
| cchapple-custom | INDEL | D6_15 | map_l100_m1_e0 | * | 92.6206 | 91.0853 | 94.2085 | 83.6799 | 235 | 23 | 244 | 15 | 8 | 53.3333 | |
| cchapple-custom | INDEL | D6_15 | map_l100_m1_e0 | het | 93.6988 | 94.4444 | 92.9648 | 84.0673 | 119 | 7 | 185 | 14 | 7 | 50.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 0.0000 | 82.3529 | 0.0000 | 0.0000 | 56 | 12 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | map_l100_m1_e0 | homalt | 95.9870 | 93.7500 | 98.3333 | 82.2485 | 60 | 4 | 59 | 1 | 1 | 100.0000 | |