PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
33251-33300 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 44 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | I1_5 | map_l100_m1_e0 | homalt | 97.3420 | 95.5598 | 99.1919 | 72.4388 | 495 | 23 | 491 | 4 | 2 | 50.0000 | |
| gduggal-bwavard | INDEL | C6_15 | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 54.5455 | 96.2963 | 0 | 0 | 6 | 5 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 37.5000 | 96.9925 | 0 | 0 | 3 | 5 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | C6_15 | map_l100_m1_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 90.3226 | 0 | 0 | 3 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | map_l100_m1_e0 | * | 68.5128 | 66.6667 | 70.4641 | 88.9767 | 172 | 86 | 167 | 70 | 58 | 82.8571 | |
| gduggal-bwavard | INDEL | D6_15 | map_l100_m1_e0 | het | 77.6064 | 99.2063 | 63.7306 | 90.0052 | 125 | 1 | 123 | 70 | 58 | 82.8571 | |
| gduggal-bwavard | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 68 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D6_15 | map_l100_m1_e0 | homalt | 84.6847 | 73.4375 | 100.0000 | 79.9087 | 47 | 17 | 44 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C1_5 | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 56.3830 | 94.8996 | 0 | 0 | 53 | 41 | 4 | 9.7561 | |
| gduggal-bwavard | INDEL | C1_5 | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 46.7532 | 95.2615 | 0 | 0 | 36 | 41 | 4 | 9.7561 | |
| gduggal-bwavard | INDEL | C1_5 | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | C1_5 | map_l100_m1_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 92.2018 | 0 | 0 | 17 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I6_15 | map_l100_m1_e0 | * | 71.7489 | 70.1754 | 73.3945 | 86.6585 | 80 | 34 | 80 | 29 | 19 | 65.5172 | |
| gduggal-bwavard | INDEL | I6_15 | map_l100_m1_e0 | het | 78.3217 | 94.9153 | 66.6667 | 88.3978 | 56 | 3 | 56 | 28 | 19 | 67.8571 | |
| gduggal-bwavard | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 22 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | I6_15 | map_l100_m1_e0 | homalt | 82.7586 | 72.7273 | 96.0000 | 73.1183 | 24 | 9 | 24 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | D1_5 | map_l100_m1_e0 | * | 92.6870 | 95.1299 | 90.3665 | 86.2223 | 1758 | 90 | 1726 | 184 | 50 | 27.1739 | |
| gduggal-bwavard | INDEL | D1_5 | map_l100_m1_e0 | het | 92.3518 | 98.9247 | 86.5979 | 88.3812 | 1196 | 13 | 1176 | 182 | 48 | 26.3736 | |
| gduggal-bwavard | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 0.0000 | 2.1277 | 0.0000 | 0.0000 | 1 | 46 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | map_l100_m1_e0 | homalt | 97.1395 | 94.7635 | 99.6377 | 74.6207 | 561 | 31 | 550 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | SNP | tv | map_l100_m1_e0 | * | 97.3811 | 99.7714 | 95.1026 | 69.0013 | 24445 | 56 | 24274 | 1250 | 21 | 1.6800 | |
| eyeh-varpipe | SNP | tv | map_l100_m1_e0 | het | 95.9704 | 99.7405 | 92.4749 | 70.7958 | 15377 | 40 | 15189 | 1236 | 16 | 1.2945 | |
| eyeh-varpipe | SNP | tv | map_l100_m1_e0 | hetalt | 99.3548 | 100.0000 | 98.7179 | 69.3517 | 41 | 0 | 154 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | SNP | tv | map_l100_m1_e0 | homalt | 99.8444 | 99.8231 | 99.8658 | 65.0500 | 9027 | 16 | 8931 | 12 | 4 | 33.3333 | |
| gduggal-bwafb | INDEL | C1_5 | map_l100_m1_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C1_5 | map_l100_m1_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C1_5 | map_l100_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C1_5 | map_l100_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | SNP | ti | map_l100_m1_e0 | * | 99.3616 | 99.7163 | 99.0095 | 67.2794 | 47795 | 136 | 46883 | 469 | 32 | 6.8230 | |
| eyeh-varpipe | SNP | ti | map_l100_m1_e0 | het | 99.0514 | 99.6226 | 98.4868 | 69.7302 | 29829 | 113 | 29158 | 448 | 19 | 4.2411 | |
| eyeh-varpipe | SNP | ti | map_l100_m1_e0 | hetalt | 99.8088 | 100.0000 | 99.6183 | 63.7119 | 29 | 0 | 261 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | ti | map_l100_m1_e0 | homalt | 99.8788 | 99.8719 | 99.8856 | 62.1452 | 17937 | 23 | 17464 | 20 | 12 | 60.0000 | |
| gduggal-bwafb | INDEL | C16_PLUS | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C16_PLUS | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C16_PLUS | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C16_PLUS | map_l100_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| eyeh-varpipe | SNP | * | map_l100_m1_e0 | * | 98.6894 | 99.7348 | 97.6657 | 67.8112 | 72211 | 192 | 69996 | 1673 | 51 | 3.0484 | |
| eyeh-varpipe | SNP | * | map_l100_m1_e0 | het | 97.9959 | 99.6627 | 96.3839 | 70.0308 | 45206 | 153 | 43739 | 1641 | 34 | 2.0719 | |
| eyeh-varpipe | SNP | * | map_l100_m1_e0 | hetalt | 99.6622 | 100.0000 | 99.3266 | 65.7044 | 41 | 0 | 295 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | SNP | * | map_l100_m1_e0 | homalt | 99.8701 | 99.8556 | 99.8846 | 63.0607 | 26964 | 39 | 25962 | 30 | 16 | 53.3333 | |
| gduggal-bwafb | INDEL | C6_15 | map_l100_m1_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C6_15 | map_l100_m1_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C6_15 | map_l100_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C6_15 | map_l100_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m1_e0 | * | 67.1429 | 54.0230 | 88.6792 | 85.5978 | 47 | 40 | 47 | 6 | 6 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m1_e0 | het | 74.7073 | 63.0435 | 91.6667 | 81.4433 | 29 | 17 | 33 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 47.0588 | 30.7692 | 100.0000 | 63.6364 | 8 | 18 | 4 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 71.4286 | 66.6667 | 76.9231 | 92.0245 | 10 | 5 | 10 | 3 | 3 | 100.0000 | |