PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
33101-33150 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | D6_15 | map_l100_m1_e0 | * | 77.5749 | 72.0930 | 83.9590 | 83.4182 | 186 | 72 | 246 | 47 | 43 | 91.4894 | |
| eyeh-varpipe | INDEL | D6_15 | map_l100_m1_e0 | het | 91.9902 | 92.8571 | 91.1392 | 82.1469 | 117 | 9 | 144 | 14 | 13 | 92.8571 | |
| eyeh-varpipe | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 38.0952 | 23.5294 | 100.0000 | 84.7826 | 16 | 52 | 28 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | map_l100_m1_e0 | homalt | 75.3723 | 82.8125 | 69.1589 | 84.6705 | 53 | 11 | 74 | 33 | 30 | 90.9091 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m1_e0 | * | 35.9447 | 23.0769 | 81.2500 | 69.2308 | 6 | 20 | 13 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m1_e0 | het | 34.9515 | 22.2222 | 81.8182 | 64.5161 | 4 | 14 | 9 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 53.3333 | 40.0000 | 80.0000 | 75.0000 | 2 | 3 | 4 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 91.5493 | 95.3806 | 0 | 0 | 65 | 6 | 3 | 50.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 86.8421 | 95.1157 | 0 | 0 | 33 | 5 | 2 | 40.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 98.2456 | 0 | 0 | 4 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | map_l100_m1_e0 | homalt | 0.0000 | 0.0000 | 96.5517 | 94.5386 | 0 | 0 | 28 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l100_m1_e0 | * | 76.4706 | 68.4211 | 86.6667 | 74.6424 | 78 | 36 | 169 | 26 | 24 | 92.3077 | |
| eyeh-varpipe | INDEL | I6_15 | map_l100_m1_e0 | het | 79.4144 | 72.8814 | 87.2340 | 74.7312 | 43 | 16 | 82 | 12 | 10 | 83.3333 | |
| eyeh-varpipe | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 62.5000 | 45.4545 | 100.0000 | 64.7059 | 10 | 12 | 30 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l100_m1_e0 | homalt | 77.9540 | 75.7576 | 80.2817 | 77.2436 | 25 | 8 | 57 | 14 | 14 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m1_e0 | * | 97.0472 | 96.6450 | 97.4528 | 83.5060 | 1786 | 62 | 2219 | 58 | 35 | 60.3448 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m1_e0 | het | 98.2562 | 98.1803 | 98.3322 | 81.6008 | 1187 | 22 | 1415 | 24 | 8 | 33.3333 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 48.9649 | 34.0426 | 87.1795 | 93.5323 | 16 | 31 | 34 | 5 | 3 | 60.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m1_e0 | homalt | 97.4137 | 98.4797 | 96.3705 | 85.1515 | 583 | 9 | 770 | 29 | 24 | 82.7586 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l100_m1_e0 | * | 92.3077 | 92.3077 | 92.3077 | 95.6449 | 24 | 2 | 24 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l100_m1_e0 | het | 94.4444 | 94.4444 | 94.4444 | 94.4444 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l100_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 92.3077 | 2 | 1 | 2 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 90.9091 | 100.0000 | 83.3333 | 97.5709 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| dgrover-gatk | SNP | * | map_l100_m1_e0 | * | 99.4999 | 99.4779 | 99.5218 | 66.8041 | 72025 | 378 | 72014 | 346 | 78 | 22.5434 | |
| dgrover-gatk | SNP | * | map_l100_m1_e0 | het | 99.3755 | 99.4665 | 99.2846 | 70.4056 | 45117 | 242 | 45106 | 325 | 62 | 19.0769 | |
| dgrover-gatk | SNP | * | map_l100_m1_e0 | hetalt | 98.7654 | 97.5610 | 100.0000 | 71.2230 | 40 | 1 | 40 | 0 | 0 | ||
| dgrover-gatk | SNP | * | map_l100_m1_e0 | homalt | 99.7105 | 99.5001 | 99.9219 | 58.2002 | 26868 | 135 | 26868 | 21 | 16 | 76.1905 | |
| dgrover-gatk | SNP | ti | map_l100_m1_e0 | * | 99.5344 | 99.4763 | 99.5926 | 66.0277 | 47680 | 251 | 47673 | 195 | 49 | 25.1282 | |
| dgrover-gatk | SNP | ti | map_l100_m1_e0 | het | 99.4173 | 99.4423 | 99.3923 | 69.6868 | 29775 | 167 | 29768 | 182 | 38 | 20.8791 | |
| dgrover-gatk | SNP | ti | map_l100_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 68.8172 | 29 | 0 | 29 | 0 | 0 | ||
| dgrover-gatk | SNP | ti | map_l100_m1_e0 | homalt | 99.7294 | 99.5323 | 99.9273 | 57.4153 | 17876 | 84 | 17876 | 13 | 11 | 84.6154 | |
| dgrover-gatk | INDEL | D6_15 | map_l100_m1_e0 | * | 96.2963 | 95.7364 | 96.8627 | 87.5245 | 247 | 11 | 247 | 8 | 2 | 25.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l100_m1_e0 | het | 96.0938 | 97.6190 | 94.6154 | 90.3274 | 123 | 3 | 123 | 7 | 2 | 28.5714 | |
| dgrover-gatk | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 95.4545 | 92.6471 | 98.4375 | 72.8814 | 63 | 5 | 63 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l100_m1_e0 | homalt | 97.6000 | 95.3125 | 100.0000 | 86.8534 | 61 | 3 | 61 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | map_l100_m1_e0 | * | 96.4286 | 94.7368 | 98.1818 | 87.9913 | 108 | 6 | 108 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l100_m1_e0 | het | 95.7265 | 94.9153 | 96.5517 | 88.7597 | 56 | 3 | 56 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 81.8182 | 20 | 2 | 20 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | map_l100_m1_e0 | homalt | 98.4615 | 96.9697 | 100.0000 | 88.9655 | 32 | 1 | 32 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | map_l100_m1_e0 | * | 98.8105 | 98.8095 | 98.8115 | 84.8192 | 1826 | 22 | 1829 | 22 | 5 | 22.7273 | |
| dgrover-gatk | INDEL | D1_5 | map_l100_m1_e0 | het | 98.6818 | 98.9247 | 98.4401 | 85.0991 | 1196 | 13 | 1199 | 19 | 3 | 15.7895 | |
| dgrover-gatk | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 94.5055 | 91.4894 | 97.7273 | 90.5579 | 43 | 4 | 43 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l100_m1_e0 | homalt | 99.4073 | 99.1554 | 99.6604 | 83.4225 | 587 | 5 | 587 | 2 | 2 | 100.0000 | |
| dgrover-gatk | SNP | tv | map_l100_m1_e0 | * | 99.4329 | 99.4817 | 99.3842 | 68.2243 | 24374 | 127 | 24370 | 151 | 29 | 19.2053 | |
| dgrover-gatk | SNP | tv | map_l100_m1_e0 | het | 99.2944 | 99.5135 | 99.0763 | 71.7035 | 15342 | 75 | 15338 | 143 | 24 | 16.7832 | |
| dgrover-gatk | SNP | tv | map_l100_m1_e0 | hetalt | 98.7654 | 97.5610 | 100.0000 | 71.2230 | 40 | 1 | 40 | 0 | 0 | ||
| dgrover-gatk | SNP | tv | map_l100_m1_e0 | homalt | 99.6730 | 99.4360 | 99.9111 | 59.6774 | 8992 | 51 | 8992 | 8 | 5 | 62.5000 | |
| dgrover-gatk | INDEL | I1_5 | map_l100_m1_e0 | * | 98.9542 | 98.8051 | 99.1038 | 84.0367 | 1323 | 16 | 1327 | 12 | 4 | 33.3333 | |
| dgrover-gatk | INDEL | I1_5 | map_l100_m1_e0 | het | 98.7103 | 98.3269 | 99.0968 | 85.3053 | 764 | 13 | 768 | 7 | 0 | 0.0000 | |