PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
32951-33000 / 86044 show all | |||||||||||||||
| dgrover-gatk | INDEL | C1_5 | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C1_5 | map_l100_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | SNP | * | map_l100_m1_e0 | * | 76.6064 | 62.3814 | 99.2353 | 82.7403 | 45166 | 27237 | 45158 | 348 | 14 | 4.0230 | |
| ckim-vqsr | SNP | * | map_l100_m1_e0 | het | 85.1033 | 74.6313 | 98.9938 | 84.0158 | 33852 | 11507 | 33844 | 344 | 11 | 3.1977 | |
| ckim-vqsr | SNP | * | map_l100_m1_e0 | hetalt | 48.1481 | 31.7073 | 100.0000 | 94.6058 | 13 | 28 | 13 | 0 | 0 | ||
| ckim-vqsr | SNP | * | map_l100_m1_e0 | homalt | 59.0007 | 41.8509 | 99.9646 | 77.1745 | 11301 | 15702 | 11301 | 4 | 3 | 75.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | * | 86.8132 | 90.8046 | 83.1579 | 94.5371 | 79 | 8 | 79 | 16 | 4 | 25.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | het | 85.7754 | 93.4783 | 79.2453 | 95.6699 | 43 | 3 | 42 | 11 | 4 | 36.3636 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 79.0909 | 22 | 4 | 23 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 82.3529 | 93.3333 | 73.6842 | 95.3086 | 14 | 1 | 14 | 5 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | * | map_l100_m1_e0 | * | 98.3431 | 98.3826 | 98.3037 | 85.8553 | 3528 | 58 | 3535 | 61 | 16 | 26.2295 | |
| dgrover-gatk | INDEL | * | map_l100_m1_e0 | het | 98.1505 | 98.3893 | 97.9130 | 86.6398 | 2199 | 36 | 2205 | 47 | 10 | 21.2766 | |
| dgrover-gatk | INDEL | * | map_l100_m1_e0 | hetalt | 94.9615 | 91.1290 | 99.1304 | 86.7512 | 113 | 11 | 114 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | * | map_l100_m1_e0 | homalt | 99.0228 | 99.1035 | 98.9422 | 84.0369 | 1216 | 11 | 1216 | 13 | 6 | 46.1538 | |
| egarrison-hhga | SNP | * | map_l100_m1_e0 | * | 99.5435 | 99.2404 | 99.8485 | 62.8269 | 71853 | 550 | 71854 | 109 | 49 | 44.9541 | |
| egarrison-hhga | SNP | * | map_l100_m1_e0 | het | 99.3656 | 98.9352 | 99.7999 | 63.8790 | 44876 | 483 | 44877 | 90 | 31 | 34.4444 | |
| egarrison-hhga | SNP | * | map_l100_m1_e0 | hetalt | 95.0000 | 92.6829 | 97.4359 | 77.5862 | 38 | 3 | 38 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | * | map_l100_m1_e0 | homalt | 99.8480 | 99.7630 | 99.9332 | 60.8894 | 26939 | 64 | 26939 | 18 | 17 | 94.4444 | |
| eyeh-varpipe | INDEL | * | map_l100_m1_e0 | * | 94.5716 | 93.6419 | 95.5200 | 92.2711 | 3358 | 228 | 4776 | 224 | 176 | 78.5714 | |
| eyeh-varpipe | INDEL | * | map_l100_m1_e0 | het | 96.1706 | 95.7494 | 96.5955 | 81.6758 | 2140 | 95 | 2894 | 102 | 68 | 66.6667 | |
| eyeh-varpipe | INDEL | * | map_l100_m1_e0 | hetalt | 47.0062 | 31.4516 | 93.0000 | 92.1198 | 39 | 85 | 93 | 7 | 5 | 71.4286 | |
| eyeh-varpipe | INDEL | * | map_l100_m1_e0 | homalt | 95.0121 | 96.0880 | 93.9601 | 84.1663 | 1179 | 48 | 1789 | 115 | 103 | 89.5652 | |
| egarrison-hhga | INDEL | I1_5 | map_l100_m1_e0 | * | 98.8042 | 98.7304 | 98.8781 | 83.3892 | 1322 | 17 | 1322 | 15 | 3 | 20.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l100_m1_e0 | het | 98.5825 | 98.4556 | 98.7097 | 83.9478 | 765 | 12 | 765 | 10 | 1 | 10.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 98.8506 | 97.7273 | 100.0000 | 89.5631 | 43 | 1 | 43 | 0 | 0 | ||
| egarrison-hhga | INDEL | I1_5 | map_l100_m1_e0 | homalt | 99.1321 | 99.2278 | 99.0366 | 81.5237 | 514 | 4 | 514 | 5 | 2 | 40.0000 | |
| egarrison-hhga | INDEL | I6_15 | map_l100_m1_e0 | * | 95.0226 | 92.1053 | 98.1308 | 84.4477 | 105 | 9 | 105 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | map_l100_m1_e0 | het | 94.7368 | 91.5254 | 98.1818 | 84.8485 | 54 | 5 | 54 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 97.6744 | 95.4545 | 100.0000 | 82.7869 | 21 | 1 | 21 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l100_m1_e0 | homalt | 93.7500 | 90.9091 | 96.7742 | 84.7291 | 30 | 3 | 30 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | tv | map_l100_m1_e0 | * | 99.4963 | 99.1715 | 99.8233 | 63.2033 | 24298 | 203 | 24298 | 43 | 19 | 44.1860 | |
| egarrison-hhga | SNP | tv | map_l100_m1_e0 | het | 99.3126 | 98.8649 | 99.7644 | 63.7472 | 15242 | 175 | 15242 | 36 | 13 | 36.1111 | |
| egarrison-hhga | SNP | tv | map_l100_m1_e0 | hetalt | 95.0000 | 92.6829 | 97.4359 | 77.5862 | 38 | 3 | 38 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | tv | map_l100_m1_e0 | homalt | 99.8284 | 99.7235 | 99.9335 | 62.1365 | 9018 | 25 | 9018 | 6 | 5 | 83.3333 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m1_e0 | * | 81.6327 | 76.9231 | 86.9565 | 87.7660 | 20 | 6 | 20 | 3 | 1 | 33.3333 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m1_e0 | het | 85.7143 | 83.3333 | 88.2353 | 86.6142 | 15 | 3 | 15 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.0000 | 3 | 0 | 3 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 50.0000 | 40.0000 | 66.6667 | 92.6829 | 2 | 3 | 2 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 97.2222 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| eyeh-varpipe | INDEL | C16_PLUS | map_l100_m1_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | C16_PLUS | map_l100_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | C16_PLUS | map_l100_m1_e0 | homalt | 0.0000 | 0.0000 | 92.3077 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| egarrison-hhga | SNP | ti | map_l100_m1_e0 | * | 99.5648 | 99.2719 | 99.8594 | 62.6430 | 47582 | 349 | 47583 | 67 | 31 | 46.2687 | |
| egarrison-hhga | SNP | ti | map_l100_m1_e0 | het | 99.3929 | 98.9713 | 99.8181 | 63.9434 | 29634 | 308 | 29635 | 54 | 18 | 33.3333 | |
| egarrison-hhga | SNP | ti | map_l100_m1_e0 | hetalt | 94.7368 | 93.1034 | 96.4286 | 76.8595 | 27 | 2 | 27 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | ti | map_l100_m1_e0 | homalt | 99.8579 | 99.7829 | 99.9331 | 60.2302 | 17921 | 39 | 17921 | 12 | 12 | 100.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l100_m1_e0 | * | 89.8876 | 91.9540 | 87.9121 | 95.3737 | 80 | 7 | 80 | 11 | 4 | 36.3636 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l100_m1_e0 | het | 88.7014 | 95.6522 | 82.6923 | 96.3989 | 44 | 2 | 43 | 9 | 4 | 44.4444 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 76.7677 | 22 | 4 | 23 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 90.3226 | 93.3333 | 87.5000 | 96.2264 | 14 | 1 | 14 | 2 | 0 | 0.0000 | |