PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
32501-32550 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 5 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | C6_15 | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 30.0000 | 96.9880 | 0 | 0 | 3 | 7 | 1 | 14.2857 | |
| gduggal-snapvard | INDEL | C6_15 | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 22.2222 | 96.9283 | 0 | 0 | 2 | 7 | 1 | 14.2857 | |
| gduggal-snapvard | INDEL | C6_15 | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C6_15 | map_l100_m1_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 97.4359 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | map_l100_m1_e0 | * | 66.5172 | 61.2403 | 72.7891 | 82.3635 | 158 | 100 | 214 | 80 | 56 | 70.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l100_m1_e0 | het | 76.3802 | 83.3333 | 70.4981 | 82.9300 | 105 | 21 | 184 | 77 | 53 | 68.8312 | |
| gduggal-snapvard | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 0.0000 | 38.2353 | 0.0000 | 0.0000 | 26 | 42 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | map_l100_m1_e0 | homalt | 57.6307 | 42.1875 | 90.9091 | 76.0870 | 27 | 37 | 30 | 3 | 3 | 100.0000 | |
| gduggal-snapvard | INDEL | C1_5 | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 49.0566 | 95.2861 | 0 | 0 | 78 | 81 | 9 | 11.1111 | |
| gduggal-snapvard | INDEL | C1_5 | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 41.1765 | 95.4085 | 0 | 0 | 56 | 80 | 9 | 11.2500 | |
| gduggal-snapvard | INDEL | C1_5 | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C1_5 | map_l100_m1_e0 | homalt | 0.0000 | 0.0000 | 95.6522 | 94.4039 | 0 | 0 | 22 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | I1_5 | map_l100_m1_e0 | * | 90.7660 | 93.5026 | 88.1850 | 85.4828 | 1252 | 87 | 1754 | 235 | 108 | 45.9574 | |
| gduggal-snapvard | INDEL | I1_5 | map_l100_m1_e0 | het | 89.7380 | 98.4556 | 82.4387 | 88.3144 | 765 | 12 | 1075 | 229 | 105 | 45.8515 | |
| gduggal-snapvard | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 0.0000 | 40.9091 | 0.0000 | 0.0000 | 18 | 26 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | map_l100_m1_e0 | homalt | 94.6381 | 90.5405 | 99.1241 | 73.0527 | 469 | 49 | 679 | 6 | 3 | 50.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l100_m1_e0 | * | 88.9711 | 94.4264 | 84.1118 | 85.2613 | 1745 | 103 | 2197 | 415 | 169 | 40.7229 | |
| gduggal-snapvard | INDEL | D1_5 | map_l100_m1_e0 | het | 87.4983 | 97.7667 | 79.1818 | 87.0966 | 1182 | 27 | 1529 | 402 | 157 | 39.0547 | |
| gduggal-snapvard | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 0.0000 | 53.1915 | 0.0000 | 0.0000 | 25 | 22 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l100_m1_e0 | homalt | 94.3471 | 90.8784 | 98.0910 | 75.2992 | 538 | 54 | 668 | 13 | 12 | 92.3077 | |
| hfeng-pmm1 | INDEL | C16_PLUS | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C16_PLUS | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C16_PLUS | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C16_PLUS | map_l100_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | D16_PLUS | map_l100_m1_e0 | * | 89.8876 | 91.9540 | 87.9121 | 92.2421 | 80 | 7 | 80 | 11 | 2 | 18.1818 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l100_m1_e0 | het | 90.5697 | 95.6522 | 86.0000 | 93.7578 | 44 | 2 | 43 | 7 | 2 | 28.5714 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 77.8846 | 22 | 4 | 23 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 84.8485 | 93.3333 | 77.7778 | 93.2836 | 14 | 1 | 14 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | * | map_l100_m1_e0 | * | 98.1895 | 97.4902 | 98.8989 | 82.4896 | 3496 | 90 | 3503 | 39 | 9 | 23.0769 | |
| hfeng-pmm1 | INDEL | * | map_l100_m1_e0 | het | 97.8105 | 96.8680 | 98.7716 | 82.6711 | 2165 | 70 | 2171 | 27 | 4 | 14.8148 | |
| hfeng-pmm1 | INDEL | * | map_l100_m1_e0 | hetalt | 94.9153 | 90.3226 | 100.0000 | 87.1298 | 112 | 12 | 113 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | map_l100_m1_e0 | homalt | 99.1863 | 99.3480 | 99.0252 | 81.5332 | 1219 | 8 | 1219 | 12 | 5 | 41.6667 | |
| hfeng-pmm1 | INDEL | C6_15 | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C6_15 | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C6_15 | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | C6_15 | map_l100_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | tv | map_l100_m1_e0 | * | 97.8612 | 98.9756 | 96.7717 | 72.1277 | 24250 | 251 | 24251 | 809 | 135 | 16.6873 | |
| ghariani-varprowl | SNP | tv | map_l100_m1_e0 | het | 97.2713 | 99.3060 | 95.3184 | 75.1777 | 15310 | 107 | 15311 | 752 | 97 | 12.8989 | |
| ghariani-varprowl | SNP | tv | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 41 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | tv | map_l100_m1_e0 | homalt | 99.1131 | 98.8610 | 99.3665 | 64.2948 | 8940 | 103 | 8940 | 57 | 38 | 66.6667 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l100_m1_e0 | * | 98.4990 | 97.6190 | 99.3949 | 80.5561 | 1804 | 44 | 1807 | 11 | 1 | 9.0909 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l100_m1_e0 | het | 98.0780 | 97.0223 | 99.1568 | 79.7611 | 1173 | 36 | 1176 | 10 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 95.5556 | 91.4894 | 100.0000 | 90.8316 | 43 | 4 | 43 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | map_l100_m1_e0 | homalt | 99.5766 | 99.3243 | 99.8302 | 80.5031 | 588 | 4 | 588 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | map_l100_m1_e0 | * | 97.0530 | 95.7364 | 98.4064 | 83.5733 | 247 | 11 | 247 | 4 | 1 | 25.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | map_l100_m1_e0 | het | 97.2332 | 97.6190 | 96.8504 | 86.2256 | 123 | 3 | 123 | 4 | 1 | 25.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 95.3846 | 91.1765 | 100.0000 | 73.5043 | 62 | 6 | 62 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l100_m1_e0 | homalt | 98.4127 | 96.8750 | 100.0000 | 83.3333 | 62 | 2 | 62 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | C1_5 | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||