PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
32451-32500 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | INDEL | I1_5 | map_l100_m1_e0 | homalt | 99.5197 | 100.0000 | 99.0440 | 80.3679 | 518 | 0 | 518 | 5 | 4 | 80.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | map_l100_m1_e0 | * | 96.4286 | 94.7368 | 98.1818 | 87.5425 | 108 | 6 | 108 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | map_l100_m1_e0 | het | 95.7265 | 94.9153 | 96.5517 | 88.2591 | 56 | 3 | 56 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 67.9245 | 95.0188 | 0 | 0 | 36 | 17 | 8 | 47.0588 | |
| cchapple-custom | INDEL | C1_5 | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 60.4651 | 94.8687 | 0 | 0 | 26 | 17 | 8 | 47.0588 | |
| cchapple-custom | INDEL | C1_5 | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | C1_5 | map_l100_m1_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 95.5752 | 0 | 0 | 10 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | map_l100_m1_e0 | * | 99.3526 | 99.5959 | 99.1104 | 66.8404 | 24402 | 99 | 24398 | 219 | 31 | 14.1553 | |
| bgallagher-sentieon | SNP | tv | map_l100_m1_e0 | het | 99.1089 | 99.5719 | 98.6501 | 70.0769 | 15351 | 66 | 15347 | 210 | 25 | 11.9048 | |
| bgallagher-sentieon | SNP | tv | map_l100_m1_e0 | hetalt | 97.5000 | 95.1220 | 100.0000 | 70.4545 | 39 | 2 | 39 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | map_l100_m1_e0 | homalt | 99.7786 | 99.6572 | 99.9002 | 59.2105 | 9012 | 31 | 9012 | 9 | 6 | 66.6667 | |
| asubramanian-gatk | INDEL | * | map_l100_m1_e0 | * | 92.0378 | 87.7579 | 96.7564 | 95.8853 | 3147 | 439 | 3162 | 106 | 17 | 16.0377 | |
| asubramanian-gatk | INDEL | * | map_l100_m1_e0 | het | 89.5146 | 84.5190 | 95.1378 | 89.5888 | 1889 | 346 | 1898 | 97 | 13 | 13.4021 | |
| asubramanian-gatk | INDEL | * | map_l100_m1_e0 | hetalt | 94.5744 | 91.1290 | 98.2906 | 87.2964 | 113 | 11 | 115 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | * | map_l100_m1_e0 | homalt | 96.2599 | 93.3170 | 99.3945 | 84.7554 | 1145 | 82 | 1149 | 7 | 3 | 42.8571 | |
| asubramanian-gatk | INDEL | C6_15 | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 91.6667 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C6_15 | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 90.0000 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C6_15 | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| asubramanian-gatk | INDEL | C6_15 | map_l100_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| astatham-gatk | SNP | tv | map_l100_m1_e0 | * | 91.7374 | 84.8986 | 99.7745 | 70.4613 | 20801 | 3700 | 20797 | 47 | 16 | 34.0426 | |
| astatham-gatk | SNP | tv | map_l100_m1_e0 | het | 86.5303 | 76.4416 | 99.6869 | 75.5609 | 11785 | 3632 | 11781 | 37 | 10 | 27.0270 | |
| astatham-gatk | SNP | tv | map_l100_m1_e0 | hetalt | 98.7654 | 97.5610 | 100.0000 | 69.9248 | 40 | 1 | 40 | 0 | 0 | ||
| astatham-gatk | SNP | tv | map_l100_m1_e0 | homalt | 99.5729 | 99.2591 | 99.8887 | 59.2933 | 8976 | 67 | 8976 | 10 | 6 | 60.0000 | |
| asubramanian-gatk | INDEL | C1_5 | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 97.9592 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C1_5 | map_l100_m1_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | C1_5 | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| asubramanian-gatk | INDEL | C1_5 | map_l100_m1_e0 | homalt | 0.0000 | 0.0000 | 95.2381 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| astatham-gatk | SNP | ti | map_l100_m1_e0 | * | 92.0088 | 85.3122 | 99.8461 | 68.2409 | 40891 | 7040 | 40884 | 63 | 36 | 57.1429 | |
| astatham-gatk | SNP | ti | map_l100_m1_e0 | het | 86.8541 | 76.8887 | 99.7875 | 73.5726 | 23022 | 6920 | 23015 | 49 | 23 | 46.9388 | |
| astatham-gatk | SNP | ti | map_l100_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 68.1319 | 29 | 0 | 29 | 0 | 0 | ||
| astatham-gatk | SNP | ti | map_l100_m1_e0 | homalt | 99.6258 | 99.3318 | 99.9216 | 57.0466 | 17840 | 120 | 17840 | 14 | 13 | 92.8571 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | * | 87.2093 | 86.2069 | 88.2353 | 95.4955 | 75 | 12 | 75 | 10 | 3 | 30.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | het | 84.9211 | 86.9565 | 82.9787 | 96.4952 | 40 | 6 | 39 | 8 | 2 | 25.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 87.5829 | 80.7692 | 95.6522 | 79.6460 | 21 | 5 | 22 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 93.3333 | 93.3333 | 93.3333 | 96.5358 | 14 | 1 | 14 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D1_5 | map_l100_m1_e0 | * | 92.8980 | 89.5022 | 96.5618 | 87.1490 | 1654 | 194 | 1657 | 59 | 7 | 11.8644 | |
| asubramanian-gatk | INDEL | D1_5 | map_l100_m1_e0 | het | 90.9054 | 87.1795 | 94.9640 | 88.1323 | 1054 | 155 | 1056 | 56 | 6 | 10.7143 | |
| asubramanian-gatk | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 96.7033 | 93.6170 | 100.0000 | 91.0020 | 44 | 3 | 44 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_l100_m1_e0 | homalt | 96.6121 | 93.9189 | 99.4643 | 83.9725 | 556 | 36 | 557 | 3 | 1 | 33.3333 | |
| asubramanian-gatk | INDEL | C16_PLUS | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 96.9697 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C16_PLUS | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 95.4545 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C16_PLUS | map_l100_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | C16_PLUS | map_l100_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | D16_PLUS | map_l100_m1_e0 | * | 8.2474 | 4.5977 | 40.0000 | 95.3052 | 4 | 83 | 4 | 6 | 1 | 16.6667 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l100_m1_e0 | het | 14.2857 | 8.6957 | 40.0000 | 95.1456 | 4 | 42 | 4 | 6 | 1 | 16.6667 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 26 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 15 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | I16_PLUS | map_l100_m1_e0 | * | 13.7405 | 7.6923 | 64.2857 | 76.0684 | 2 | 24 | 18 | 10 | 8 | 80.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l100_m1_e0 | het | 18.9474 | 11.1111 | 64.2857 | 75.6522 | 2 | 16 | 18 | 10 | 8 | 80.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||