PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
32151-32200 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 94.5736 | 89.7059 | 100.0000 | 66.6667 | 61 | 7 | 61 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | map_l100_m1_e0 | homalt | 98.4375 | 98.4375 | 98.4375 | 84.1975 | 63 | 1 | 63 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | C1_5 | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | C1_5 | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | C1_5 | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | C1_5 | map_l100_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | D1_5 | map_l100_m1_e0 | * | 98.5318 | 97.9978 | 99.0715 | 81.6035 | 1811 | 37 | 1814 | 17 | 5 | 29.4118 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l100_m1_e0 | het | 98.3404 | 97.9322 | 98.7521 | 81.2217 | 1184 | 25 | 1187 | 15 | 3 | 20.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 94.3820 | 89.3617 | 100.0000 | 88.8298 | 42 | 5 | 42 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | map_l100_m1_e0 | homalt | 99.2366 | 98.8176 | 99.6593 | 81.5176 | 585 | 7 | 585 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | C16_PLUS | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | C16_PLUS | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | C16_PLUS | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | C16_PLUS | map_l100_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | I16_PLUS | map_l100_m1_e0 | * | 93.8776 | 88.4615 | 100.0000 | 92.5325 | 23 | 3 | 23 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | map_l100_m1_e0 | het | 94.1176 | 88.8889 | 100.0000 | 90.6977 | 16 | 2 | 16 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | map_l100_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 88.2353 | 2 | 1 | 2 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.7983 | 5 | 0 | 5 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D16_PLUS | map_l100_m1_e0 | * | 88.6364 | 89.6552 | 87.6404 | 92.1793 | 78 | 9 | 78 | 11 | 4 | 36.3636 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l100_m1_e0 | het | 86.4024 | 91.3043 | 82.0000 | 93.3066 | 42 | 4 | 41 | 9 | 4 | 44.4444 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 73.5632 | 22 | 4 | 23 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 90.3226 | 93.3333 | 87.5000 | 94.7368 | 14 | 1 | 14 | 2 | 0 | 0.0000 | |
| mlin-fermikit | SNP | ti | map_l100_m1_e0 | * | 73.0893 | 60.7644 | 91.6861 | 50.6018 | 29125 | 18806 | 29125 | 2641 | 2337 | 88.4892 | |
| mlin-fermikit | SNP | ti | map_l100_m1_e0 | het | 71.7393 | 56.3489 | 98.6955 | 52.5376 | 16872 | 13070 | 16872 | 223 | 9 | 4.0359 | |
| mlin-fermikit | SNP | ti | map_l100_m1_e0 | hetalt | 55.0000 | 37.9310 | 100.0000 | 70.2703 | 11 | 18 | 11 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | map_l100_m1_e0 | homalt | 75.0582 | 68.1626 | 83.5061 | 48.1080 | 12242 | 5718 | 12242 | 2418 | 2328 | 96.2779 | |
| ndellapenna-hhga | INDEL | C16_PLUS | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C16_PLUS | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C16_PLUS | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C16_PLUS | map_l100_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | SNP | * | map_l100_m1_e0 | * | 72.2095 | 59.9657 | 90.7360 | 51.7425 | 43417 | 28986 | 43409 | 4432 | 3924 | 88.5379 | |
| mlin-fermikit | SNP | * | map_l100_m1_e0 | het | 71.0748 | 55.5458 | 98.6565 | 54.0604 | 25195 | 20164 | 25187 | 343 | 11 | 3.2070 | |
| mlin-fermikit | SNP | * | map_l100_m1_e0 | hetalt | 56.1404 | 39.0244 | 100.0000 | 68.6275 | 16 | 25 | 16 | 0 | 0 | ||
| mlin-fermikit | SNP | * | map_l100_m1_e0 | homalt | 73.8610 | 67.4221 | 81.6596 | 48.7624 | 18206 | 8797 | 18206 | 4089 | 3913 | 95.6958 | |
| ndellapenna-hhga | INDEL | * | map_l100_m1_e0 | * | 97.2875 | 96.9325 | 97.6451 | 97.5899 | 3476 | 110 | 3483 | 84 | 38 | 45.2381 | |
| ndellapenna-hhga | INDEL | * | map_l100_m1_e0 | het | 97.2839 | 97.4049 | 97.1631 | 83.0935 | 2177 | 58 | 2192 | 64 | 26 | 40.6250 | |
| ndellapenna-hhga | INDEL | * | map_l100_m1_e0 | hetalt | 84.1295 | 75.8065 | 94.5055 | 88.4664 | 94 | 30 | 86 | 5 | 2 | 40.0000 | |
| ndellapenna-hhga | INDEL | * | map_l100_m1_e0 | homalt | 98.4879 | 98.2070 | 98.7705 | 81.8398 | 1205 | 22 | 1205 | 15 | 10 | 66.6667 | |
| mlin-fermikit | INDEL | I1_5 | map_l100_m1_e0 | homalt | 74.4541 | 65.8301 | 85.6784 | 74.7141 | 341 | 177 | 341 | 57 | 55 | 96.4912 | |
| mlin-fermikit | INDEL | I6_15 | map_l100_m1_e0 | * | 76.2909 | 67.5439 | 87.6404 | 81.8367 | 77 | 37 | 78 | 11 | 10 | 90.9091 | |
| mlin-fermikit | INDEL | I6_15 | map_l100_m1_e0 | het | 81.9153 | 76.2712 | 88.4615 | 80.2281 | 45 | 14 | 46 | 6 | 5 | 83.3333 | |
| mlin-fermikit | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 70.5882 | 54.5455 | 100.0000 | 75.0000 | 12 | 10 | 12 | 0 | 0 | ||
| mlin-fermikit | INDEL | I6_15 | map_l100_m1_e0 | homalt | 68.9655 | 60.6061 | 80.0000 | 86.0335 | 20 | 13 | 20 | 5 | 5 | 100.0000 | |
| ndellapenna-hhga | INDEL | C1_5 | map_l100_m1_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C1_5 | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C1_5 | map_l100_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C1_5 | map_l100_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | tv | map_l100_m1_e0 | * | 70.4651 | 58.3772 | 88.8661 | 53.8051 | 14303 | 10198 | 14295 | 1791 | 1587 | 88.6097 | |
| mlin-fermikit | SNP | tv | map_l100_m1_e0 | het | 69.7650 | 53.9859 | 98.5774 | 56.8653 | 8323 | 7094 | 8315 | 120 | 2 | 1.6667 | |
| mlin-fermikit | SNP | tv | map_l100_m1_e0 | hetalt | 56.1404 | 39.0244 | 100.0000 | 68.6275 | 16 | 25 | 16 | 0 | 0 | ||