PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
31651-31700 / 86044 show all | |||||||||||||||
| jli-custom | INDEL | C16_PLUS | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jli-custom | INDEL | C16_PLUS | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jlack-gatk | SNP | * | map_l100_m2_e0 | * | 97.0473 | 99.1293 | 95.0510 | 75.5620 | 73320 | 644 | 73309 | 3817 | 291 | 7.6238 | |
| jlack-gatk | SNP | * | map_l100_m2_e0 | het | 95.7132 | 99.2694 | 92.4029 | 79.6895 | 46060 | 339 | 46049 | 3786 | 266 | 7.0259 | |
| jlack-gatk | SNP | * | map_l100_m2_e0 | hetalt | 94.1176 | 95.2381 | 93.0233 | 86.0841 | 40 | 2 | 40 | 3 | 3 | 100.0000 | |
| jlack-gatk | SNP | * | map_l100_m2_e0 | homalt | 99.3957 | 98.8991 | 99.8972 | 61.0320 | 27220 | 303 | 27220 | 28 | 22 | 78.5714 | |
| jlack-gatk | INDEL | I16_PLUS | map_l100_m2_e0 | * | 90.5660 | 92.3077 | 88.8889 | 96.4613 | 24 | 2 | 24 | 3 | 1 | 33.3333 | |
| jlack-gatk | INDEL | I16_PLUS | map_l100_m2_e0 | het | 94.7368 | 100.0000 | 90.0000 | 95.6710 | 18 | 0 | 18 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l100_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 94.4444 | 2 | 1 | 2 | 0 | 0 | ||
| jlack-gatk | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 80.0000 | 80.0000 | 80.0000 | 98.1132 | 4 | 1 | 4 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l100_m2_e0 | * | 92.7660 | 93.9655 | 91.5966 | 89.8029 | 109 | 7 | 109 | 10 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l100_m2_e0 | het | 89.6000 | 91.8033 | 87.5000 | 91.2688 | 56 | 5 | 56 | 8 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 84.6154 | 20 | 2 | 20 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | map_l100_m2_e0 | homalt | 97.0588 | 100.0000 | 94.2857 | 88.4868 | 33 | 0 | 33 | 2 | 0 | 0.0000 | |
| jli-custom | INDEL | C6_15 | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jli-custom | INDEL | C6_15 | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jli-custom | INDEL | C6_15 | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jli-custom | INDEL | C6_15 | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jli-custom | INDEL | D6_15 | map_l100_m2_e0 | * | 96.9509 | 96.2121 | 97.7011 | 84.9394 | 254 | 10 | 255 | 6 | 1 | 16.6667 | |
| jli-custom | INDEL | D6_15 | map_l100_m2_e0 | het | 96.5923 | 96.9466 | 96.2406 | 87.4882 | 127 | 4 | 128 | 5 | 1 | 20.0000 | |
| jli-custom | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 96.2406 | 94.1176 | 98.4615 | 73.6842 | 64 | 4 | 64 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D6_15 | map_l100_m2_e0 | homalt | 98.4375 | 96.9231 | 100.0000 | 85.1064 | 63 | 2 | 63 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | map_l100_m2_e0 | * | 86.2745 | 84.6154 | 88.0000 | 94.3311 | 22 | 4 | 22 | 3 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l100_m2_e0 | het | 88.2353 | 83.3333 | 93.7500 | 91.0615 | 15 | 3 | 15 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l100_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 91.6667 | 2 | 1 | 2 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 83.3333 | 100.0000 | 71.4286 | 97.0588 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| jli-custom | INDEL | I1_5 | map_l100_m2_e0 | * | 99.2302 | 98.9035 | 99.5591 | 82.7700 | 1353 | 15 | 1355 | 6 | 3 | 50.0000 | |
| jli-custom | INDEL | I1_5 | map_l100_m2_e0 | het | 99.1120 | 98.4868 | 99.7452 | 83.3439 | 781 | 12 | 783 | 2 | 0 | 0.0000 | |
| jli-custom | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 96.4706 | 93.1818 | 100.0000 | 89.6985 | 41 | 3 | 41 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | map_l100_m2_e0 | homalt | 99.6248 | 100.0000 | 99.2523 | 80.8106 | 531 | 0 | 531 | 4 | 3 | 75.0000 | |
| jli-custom | INDEL | I6_15 | map_l100_m2_e0 | * | 95.0673 | 91.3793 | 99.0654 | 85.5405 | 106 | 10 | 106 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l100_m2_e0 | het | 93.1034 | 88.5246 | 98.1818 | 85.6397 | 54 | 7 | 54 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 97.6744 | 95.4545 | 100.0000 | 81.8966 | 21 | 1 | 21 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | map_l100_m2_e0 | homalt | 96.8750 | 93.9394 | 100.0000 | 87.1369 | 31 | 2 | 31 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | map_l100_m2_e0 | * | 98.6673 | 98.5379 | 98.7971 | 83.0195 | 1887 | 28 | 1889 | 23 | 8 | 34.7826 | |
| jli-custom | INDEL | D1_5 | map_l100_m2_e0 | het | 98.6492 | 98.8057 | 98.4933 | 82.5249 | 1241 | 15 | 1242 | 19 | 5 | 26.3158 | |
| jli-custom | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 89.9123 | 83.3333 | 97.6190 | 91.8605 | 40 | 8 | 41 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D1_5 | map_l100_m2_e0 | homalt | 99.3443 | 99.1817 | 99.5074 | 82.7381 | 606 | 5 | 606 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | C1_5 | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jli-custom | INDEL | C1_5 | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jli-custom | INDEL | C1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jli-custom | INDEL | C1_5 | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jli-custom | INDEL | D16_PLUS | map_l100_m2_e0 | * | 90.3955 | 88.8889 | 91.9540 | 93.3231 | 80 | 10 | 80 | 7 | 2 | 28.5714 | |
| jli-custom | INDEL | D16_PLUS | map_l100_m2_e0 | het | 90.3408 | 89.5833 | 91.1111 | 94.6492 | 43 | 5 | 41 | 4 | 2 | 50.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 76.4706 | 22 | 4 | 24 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 88.2353 | 93.7500 | 83.3333 | 95.0000 | 15 | 1 | 15 | 3 | 0 | 0.0000 | |
| jli-custom | SNP | ti | map_l100_m2_e0 | * | 99.4978 | 99.3362 | 99.6598 | 62.5143 | 48636 | 325 | 48634 | 166 | 50 | 30.1205 | |
| jli-custom | SNP | ti | map_l100_m2_e0 | het | 99.3179 | 99.1411 | 99.4953 | 64.3096 | 30359 | 263 | 30357 | 154 | 38 | 24.6753 | |
| jli-custom | SNP | ti | map_l100_m2_e0 | hetalt | 98.3607 | 100.0000 | 96.7742 | 72.8070 | 30 | 0 | 30 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | ti | map_l100_m2_e0 | homalt | 99.8004 | 99.6614 | 99.9398 | 59.0453 | 18247 | 62 | 18247 | 11 | 11 | 100.0000 | |