PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
31451-31500 / 86044 show all | |||||||||||||||
| egarrison-hhga | SNP | tv | map_l100_m2_e0 | hetalt | 95.1220 | 92.8571 | 97.5000 | 79.6954 | 39 | 3 | 39 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | tv | map_l100_m2_e0 | homalt | 99.8316 | 99.7287 | 99.9347 | 64.6441 | 9189 | 25 | 9189 | 6 | 5 | 83.3333 | |
| eyeh-varpipe | INDEL | * | map_l100_m2_e0 | * | 94.5816 | 93.6637 | 95.5178 | 92.5332 | 3459 | 234 | 4944 | 232 | 182 | 78.4483 | |
| eyeh-varpipe | INDEL | * | map_l100_m2_e0 | het | 96.1330 | 95.6220 | 96.6495 | 82.3053 | 2206 | 101 | 3000 | 104 | 69 | 66.3462 | |
| eyeh-varpipe | INDEL | * | map_l100_m2_e0 | hetalt | 47.6427 | 32.0000 | 93.2039 | 92.5254 | 40 | 85 | 96 | 7 | 5 | 71.4286 | |
| eyeh-varpipe | INDEL | * | map_l100_m2_e0 | homalt | 95.0097 | 96.1935 | 93.8547 | 84.5593 | 1213 | 48 | 1848 | 121 | 108 | 89.2562 | |
| eyeh-varpipe | INDEL | C16_PLUS | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 97.6744 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| eyeh-varpipe | INDEL | C16_PLUS | map_l100_m2_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | C16_PLUS | map_l100_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | C16_PLUS | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 93.7500 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| egarrison-hhga | SNP | ti | map_l100_m2_e0 | * | 99.5647 | 99.2770 | 99.8541 | 64.5210 | 48607 | 354 | 48608 | 71 | 32 | 45.0704 | |
| egarrison-hhga | SNP | ti | map_l100_m2_e0 | het | 99.3933 | 98.9779 | 99.8123 | 65.4669 | 30309 | 313 | 30310 | 57 | 18 | 31.5789 | |
| egarrison-hhga | SNP | ti | map_l100_m2_e0 | hetalt | 94.9153 | 93.3333 | 96.5517 | 78.9855 | 28 | 2 | 28 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | ti | map_l100_m2_e0 | homalt | 99.8579 | 99.7870 | 99.9289 | 62.7872 | 18270 | 39 | 18270 | 13 | 13 | 100.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m2_e0 | * | 81.6327 | 76.9231 | 86.9565 | 89.9123 | 20 | 6 | 20 | 3 | 1 | 33.3333 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m2_e0 | het | 85.7143 | 83.3333 | 88.2353 | 88.3562 | 15 | 3 | 15 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.4615 | 3 | 0 | 3 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 50.0000 | 40.0000 | 66.6667 | 94.6429 | 2 | 3 | 2 | 1 | 0 | 0.0000 | |
| egarrison-hhga | SNP | * | map_l100_m2_e0 | * | 99.5430 | 99.2483 | 99.8395 | 64.7214 | 73408 | 556 | 73409 | 118 | 50 | 42.3729 | |
| egarrison-hhga | SNP | * | map_l100_m2_e0 | het | 99.3648 | 98.9461 | 99.7870 | 65.4283 | 45910 | 489 | 45911 | 98 | 31 | 31.6327 | |
| egarrison-hhga | SNP | * | map_l100_m2_e0 | hetalt | 95.1220 | 92.8571 | 97.5000 | 79.6954 | 39 | 3 | 39 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | * | map_l100_m2_e0 | homalt | 99.8491 | 99.7675 | 99.9309 | 63.4300 | 27459 | 64 | 27459 | 19 | 18 | 94.7368 | |
| eyeh-varpipe | INDEL | C6_15 | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 100.0000 | 95.9091 | 0 | 0 | 9 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 100.0000 | 96.0396 | 0 | 0 | 4 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 96.9697 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 95.3488 | 0 | 0 | 4 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | map_l100_m2_e0 | * | 77.5010 | 72.3485 | 83.4437 | 83.8330 | 191 | 73 | 252 | 50 | 46 | 92.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l100_m2_e0 | het | 91.8595 | 92.3664 | 91.3580 | 82.6367 | 121 | 10 | 148 | 14 | 13 | 92.8571 | |
| eyeh-varpipe | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 38.0952 | 23.5294 | 100.0000 | 85.3535 | 16 | 52 | 29 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | map_l100_m2_e0 | homalt | 74.5239 | 83.0769 | 67.5676 | 84.9389 | 54 | 11 | 75 | 36 | 33 | 91.6667 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m2_e0 | * | 35.9447 | 23.0769 | 81.2500 | 72.8814 | 6 | 20 | 13 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m2_e0 | het | 34.9515 | 22.2222 | 81.8182 | 68.5714 | 4 | 14 | 9 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 53.3333 | 40.0000 | 80.0000 | 78.2609 | 2 | 3 | 4 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l100_m2_e0 | * | 96.3034 | 96.1257 | 96.4817 | 82.0384 | 1315 | 53 | 2139 | 78 | 60 | 76.9231 | |
| eyeh-varpipe | INDEL | I1_5 | map_l100_m2_e0 | het | 97.0080 | 97.3518 | 96.6667 | 80.9840 | 772 | 21 | 1218 | 42 | 28 | 66.6667 | |
| eyeh-varpipe | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 62.8863 | 47.7273 | 92.1569 | 90.4315 | 21 | 23 | 47 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l100_m2_e0 | homalt | 97.3779 | 98.3051 | 96.4680 | 82.5231 | 522 | 9 | 874 | 32 | 29 | 90.6250 | |
| eyeh-varpipe | INDEL | I6_15 | map_l100_m2_e0 | * | 76.3242 | 68.1034 | 86.8020 | 75.9463 | 79 | 37 | 171 | 26 | 24 | 92.3077 | |
| eyeh-varpipe | INDEL | I6_15 | map_l100_m2_e0 | het | 79.0220 | 72.1311 | 87.3684 | 76.1905 | 44 | 17 | 83 | 12 | 10 | 83.3333 | |
| eyeh-varpipe | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 62.5000 | 45.4545 | 100.0000 | 66.2921 | 10 | 12 | 30 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l100_m2_e0 | homalt | 78.0829 | 75.7576 | 80.5556 | 78.2477 | 25 | 8 | 58 | 14 | 14 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m2_e0 | * | 97.0663 | 96.7102 | 97.4251 | 83.8811 | 1852 | 63 | 2308 | 61 | 36 | 59.0164 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m2_e0 | het | 98.2510 | 98.1688 | 98.3333 | 82.0789 | 1233 | 23 | 1475 | 25 | 8 | 32.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 50.4742 | 35.4167 | 87.8049 | 93.6923 | 17 | 31 | 36 | 5 | 3 | 60.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m2_e0 | homalt | 97.3783 | 98.5270 | 96.2560 | 85.4148 | 602 | 9 | 797 | 31 | 25 | 80.6452 | |
| eyeh-varpipe | INDEL | C1_5 | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 91.5493 | 95.7485 | 0 | 0 | 65 | 6 | 3 | 50.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 86.8421 | 95.5083 | 0 | 0 | 33 | 5 | 2 | 40.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 98.4064 | 0 | 0 | 4 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 96.5517 | 94.9389 | 0 | 0 | 28 | 1 | 1 | 100.0000 | |