PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
31301-31350 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | I1_5 | map_l100_m2_e0 | * | 97.2488 | 96.9298 | 97.5700 | 85.3664 | 1326 | 42 | 1325 | 33 | 8 | 24.2424 | |
| ckim-dragen | INDEL | I1_5 | map_l100_m2_e0 | het | 96.2025 | 95.8386 | 96.5693 | 87.1089 | 760 | 33 | 760 | 27 | 3 | 11.1111 | |
| ckim-dragen | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 96.4706 | 93.1818 | 100.0000 | 88.4507 | 41 | 3 | 41 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | map_l100_m2_e0 | homalt | 98.8690 | 98.8701 | 98.8679 | 81.2057 | 525 | 6 | 524 | 6 | 5 | 83.3333 | |
| ckim-dragen | INDEL | D16_PLUS | map_l100_m2_e0 | * | 82.4121 | 91.1111 | 75.2294 | 95.6746 | 82 | 8 | 82 | 27 | 4 | 14.8148 | |
| ckim-dragen | INDEL | D16_PLUS | map_l100_m2_e0 | het | 78.9957 | 93.7500 | 68.2540 | 96.5385 | 45 | 3 | 43 | 20 | 2 | 10.0000 | |
| ckim-dragen | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 77.5701 | 22 | 4 | 24 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 78.9474 | 93.7500 | 68.1818 | 96.2901 | 15 | 1 | 15 | 7 | 2 | 28.5714 | |
| ckim-dragen | INDEL | C16_PLUS | map_l100_m2_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | C16_PLUS | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C16_PLUS | map_l100_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | C16_PLUS | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C6_15 | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C6_15 | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C6_15 | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C6_15 | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | D16_PLUS | map_l100_m2_e0 | * | 79.4406 | 78.8889 | 80.0000 | 92.4306 | 71 | 19 | 72 | 18 | 9 | 50.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l100_m2_e0 | het | 83.6445 | 85.4167 | 81.9444 | 92.5620 | 41 | 7 | 59 | 13 | 7 | 53.8462 | |
| cchapple-custom | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 0.0000 | 65.3846 | 0.0000 | 0.0000 | 17 | 9 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 76.4706 | 81.2500 | 72.2222 | 91.8552 | 13 | 3 | 13 | 5 | 2 | 40.0000 | |
| cchapple-custom | INDEL | D1_5 | map_l100_m2_e0 | * | 96.7824 | 97.3368 | 96.2343 | 82.5675 | 1864 | 51 | 1840 | 72 | 9 | 12.5000 | |
| cchapple-custom | INDEL | D1_5 | map_l100_m2_e0 | het | 96.0894 | 97.5318 | 94.6889 | 83.3900 | 1225 | 31 | 1248 | 70 | 7 | 10.0000 | |
| cchapple-custom | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 87.5000 | 0.0000 | 0.0000 | 42 | 6 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | map_l100_m2_e0 | homalt | 98.6763 | 97.7087 | 99.6633 | 80.4154 | 597 | 14 | 592 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l100_m2_e0 | * | 97.3100 | 97.0029 | 97.6190 | 83.7387 | 1327 | 41 | 1312 | 32 | 10 | 31.2500 | |
| cchapple-custom | INDEL | I1_5 | map_l100_m2_e0 | het | 96.5400 | 96.5952 | 96.4848 | 85.2941 | 766 | 27 | 796 | 29 | 8 | 27.5862 | |
| cchapple-custom | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 90.9091 | 0.0000 | 0.0000 | 40 | 4 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | map_l100_m2_e0 | homalt | 98.7651 | 98.1168 | 99.4220 | 80.4520 | 521 | 10 | 516 | 3 | 2 | 66.6667 | |
| cchapple-custom | INDEL | I6_15 | map_l100_m2_e0 | * | 92.9049 | 92.2414 | 93.5780 | 88.1907 | 107 | 9 | 102 | 7 | 2 | 28.5714 | |
| cchapple-custom | INDEL | I6_15 | map_l100_m2_e0 | het | 91.1243 | 90.1639 | 92.1053 | 88.7073 | 55 | 6 | 70 | 6 | 1 | 16.6667 | |
| cchapple-custom | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 0.0000 | 90.9091 | 0.0000 | 0.0000 | 20 | 2 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | map_l100_m2_e0 | homalt | 96.9697 | 96.9697 | 96.9697 | 86.8000 | 32 | 1 | 32 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | * | map_l100_m2_e0 | * | 97.5457 | 97.7435 | 97.3487 | 69.9609 | 72295 | 1669 | 72297 | 1969 | 408 | 20.7212 | |
| cchapple-custom | SNP | * | map_l100_m2_e0 | het | 96.8591 | 97.8857 | 95.8537 | 73.9797 | 45418 | 981 | 45473 | 1967 | 406 | 20.6406 | |
| cchapple-custom | SNP | * | map_l100_m2_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 42 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | * | map_l100_m2_e0 | homalt | 98.7307 | 97.5003 | 99.9925 | 58.6733 | 26835 | 688 | 26824 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | I16_PLUS | map_l100_m2_e0 | * | 91.1641 | 96.1538 | 86.6667 | 94.7826 | 25 | 1 | 26 | 4 | 1 | 25.0000 | |
| cchapple-custom | INDEL | I16_PLUS | map_l100_m2_e0 | het | 90.8397 | 94.4444 | 87.5000 | 93.8931 | 17 | 1 | 21 | 3 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I16_PLUS | map_l100_m2_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 3 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 90.9091 | 100.0000 | 83.3333 | 96.7033 | 5 | 0 | 5 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | C6_15 | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 50.0000 | 95.2096 | 0 | 0 | 4 | 4 | 1 | 25.0000 | |
| cchapple-custom | INDEL | C6_15 | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 42.8571 | 94.4882 | 0 | 0 | 3 | 4 | 1 | 25.0000 | |
| cchapple-custom | INDEL | C6_15 | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | C6_15 | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 97.5000 | 0 | 0 | 1 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | map_l100_m2_e0 | * | 92.7783 | 91.2879 | 94.3182 | 84.3509 | 241 | 23 | 249 | 15 | 8 | 53.3333 | |
| cchapple-custom | INDEL | D6_15 | map_l100_m2_e0 | het | 93.8735 | 94.6565 | 93.1034 | 84.7712 | 124 | 7 | 189 | 14 | 7 | 50.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 0.0000 | 82.3529 | 0.0000 | 0.0000 | 56 | 12 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | map_l100_m2_e0 | homalt | 96.0504 | 93.8462 | 98.3607 | 82.7684 | 61 | 4 | 60 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | I16_PLUS | map_l100_m2_e0 | * | 6.6667 | 3.8462 | 25.0000 | 97.0149 | 1 | 25 | 1 | 3 | 1 | 33.3333 | |
| ciseli-custom | INDEL | I16_PLUS | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 98.9899 | 0 | 18 | 0 | 1 | 0 | 0.0000 | ||