PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 622 623 624 625 626 627 628 629 630 ... 1720 1721 » 31251-31300 / 86044 show all
ckim-gatk	INDEL	D6_15	map_l100_m2_e0	hetalt	96.1832	92.6471	100.0000	75.2941	63	5	63	0	0
ckim-gatk	INDEL	D6_15	map_l100_m2_e0	homalt	98.4375	96.9231	100.0000	87.4251	63	2	63	0	0
ckim-isaac	INDEL	*	map_l100_m2_e0	*	81.7339	69.9161	98.3594	84.3176	2582	1111	2578	43	21	48.8372
ckim-isaac	INDEL	*	map_l100_m2_e0	het	84.2881	73.9489	97.9885	86.2255	1706	601	1705	35	15	42.8571
ckim-isaac	INDEL	*	map_l100_m2_e0	hetalt	75.0774	61.6000	96.1039	86.5854	77	48	74	3	3	100.0000
ckim-isaac	INDEL	*	map_l100_m2_e0	homalt	77.3850	63.3624	99.3781	77.0744	799	462	799	5	3	60.0000
ckim-isaac	INDEL	C6_15	map_l100_m2_e0	*		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-isaac	INDEL	C6_15	map_l100_m2_e0	het		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-isaac	INDEL	C6_15	map_l100_m2_e0	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-isaac	INDEL	C6_15	map_l100_m2_e0	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-isaac	INDEL	D16_PLUS	map_l100_m2_e0	*	35.8056	23.3333	76.9231	92.6346	21	69	20	6	3	50.0000
ckim-isaac	INDEL	D16_PLUS	map_l100_m2_e0	het	28.2353	18.7500	57.1429	94.4444	9	39	8	6	3	50.0000
ckim-isaac	INDEL	D16_PLUS	map_l100_m2_e0	hetalt	55.5556	38.4615	100.0000	83.3333	10	16	10	0	0
ckim-isaac	INDEL	D16_PLUS	map_l100_m2_e0	homalt	22.2222	12.5000	100.0000	95.1220	2	14	2	0	0
ckim-isaac	INDEL	D1_5	map_l100_m2_e0	*	84.1952	73.5770	98.3950	83.2672	1409	506	1410	23	11	47.8261
ckim-isaac	INDEL	D1_5	map_l100_m2_e0	het	86.2638	76.9904	98.0769	84.9825	967	289	969	19	7	36.8421
ckim-isaac	INDEL	D1_5	map_l100_m2_e0	hetalt	77.0186	66.6667	91.1765	89.5706	32	16	31	3	3	100.0000
ckim-isaac	INDEL	D1_5	map_l100_m2_e0	homalt	80.2348	67.1031	99.7567	75.2260	410	201	410	1	1	100.0000
ckim-isaac	INDEL	D6_15	map_l100_m2_e0	*	65.8291	50.0000	96.3235	84.3858	132	132	131	5	4	80.0000
ckim-isaac	INDEL	D6_15	map_l100_m2_e0	het	60.8031	45.0382	93.5484	89.8527	59	72	58	4	3	75.0000
ckim-isaac	INDEL	D6_15	map_l100_m2_e0	hetalt	77.8761	64.7059	97.7778	70.0000	44	24	44	1	1	100.0000
ckim-isaac	INDEL	D6_15	map_l100_m2_e0	homalt	61.7021	44.6154	100.0000	73.6364	29	36	29	0	0
ckim-isaac	INDEL	C1_5	map_l100_m2_e0	*		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-isaac	INDEL	C1_5	map_l100_m2_e0	het		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-isaac	INDEL	C1_5	map_l100_m2_e0	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-isaac	INDEL	C1_5	map_l100_m2_e0	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-gatk	SNP	tv	map_l100_m2_e0	*	88.3659	80.7254	97.6039	81.5961	20208	4825	20204	496	17	3.4274
ckim-gatk	SNP	tv	map_l100_m2_e0	het	91.4895	86.9494	96.5299	84.2447	13718	2059	13714	493	16	3.2454
ckim-gatk	SNP	tv	map_l100_m2_e0	hetalt	78.8732	66.6667	96.5517	90.1024	28	14	28	1	1	100.0000
ckim-gatk	SNP	tv	map_l100_m2_e0	homalt	82.4340	70.1324	99.9691	70.6315	6462	2752	6462	2	0	0.0000
ckim-isaac	INDEL	C16_PLUS	map_l100_m2_e0	*		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-isaac	INDEL	C16_PLUS	map_l100_m2_e0	het		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-isaac	INDEL	C16_PLUS	map_l100_m2_e0	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-isaac	INDEL	C16_PLUS	map_l100_m2_e0	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-dragen	INDEL	C1_5	map_l100_m2_e0	*		0.0000		100.0000	0	0	0	0	0
ckim-dragen	INDEL	C1_5	map_l100_m2_e0	het		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-dragen	INDEL	C1_5	map_l100_m2_e0	hetalt		0.0000		100.0000	0	0	0	0	0
ckim-dragen	INDEL	C1_5	map_l100_m2_e0	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-dragen	INDEL	D1_5	map_l100_m2_e0	*	97.6319	98.0157	97.2510	85.8443	1877	38	1875	53	6	11.3208
ckim-dragen	INDEL	D1_5	map_l100_m2_e0	het	97.0429	98.0892	96.0187	86.4645	1232	24	1230	51	4	7.8431
ckim-dragen	INDEL	D1_5	map_l100_m2_e0	hetalt	93.3333	87.5000	100.0000	90.3153	42	6	43	0	0
ckim-dragen	INDEL	D1_5	map_l100_m2_e0	homalt	99.1774	98.6907	99.6689	83.7284	603	8	602	2	2	100.0000
ckim-dragen	INDEL	D6_15	map_l100_m2_e0	*	96.5517	95.4545	97.6744	88.7582	252	12	252	6	1	16.6667
ckim-dragen	INDEL	D6_15	map_l100_m2_e0	het	96.9697	97.7099	96.2406	91.0377	128	3	128	5	0	0.0000
ckim-dragen	INDEL	D6_15	map_l100_m2_e0	hetalt	95.3846	91.1765	100.0000	71.0280	62	6	62	0	0
ckim-dragen	INDEL	D6_15	map_l100_m2_e0	homalt	96.8750	95.3846	98.4127	89.4472	62	3	62	1	1	100.0000
ckim-dragen	INDEL	I16_PLUS	map_l100_m2_e0	*	88.8889	92.3077	85.7143	94.7269	24	2	24	4	0	0.0000
ckim-dragen	INDEL	I16_PLUS	map_l100_m2_e0	het	91.8919	94.4444	89.4737	94.6328	17	1	17	2	0	0.0000
ckim-dragen	INDEL	I16_PLUS	map_l100_m2_e0	hetalt	80.0000	66.6667	100.0000	93.7500	2	1	2	0	0
ckim-dragen	INDEL	I16_PLUS	map_l100_m2_e0	homalt	83.3333	100.0000	71.4286	95.1724	5	0	5	2	0	0.0000

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge