PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
31051-31100 / 86044 show all | |||||||||||||||
| gduggal-snapfb | INDEL | D16_PLUS | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 90 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 48 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 26 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 16 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D1_5 | map_l100_m2_e0 | * | 96.2111 | 96.1880 | 96.2343 | 84.4528 | 1842 | 73 | 1840 | 72 | 13 | 18.0556 | |
| gduggal-snapfb | INDEL | D1_5 | map_l100_m2_e0 | het | 95.7149 | 96.4968 | 94.9456 | 82.1389 | 1212 | 44 | 1221 | 65 | 8 | 12.3077 | |
| gduggal-snapfb | INDEL | I16_PLUS | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 26 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 18 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 5 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | I1_5 | map_l100_m2_e0 | * | 79.7551 | 66.6667 | 99.2383 | 92.3930 | 912 | 456 | 912 | 7 | 2 | 28.5714 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l100_m2_e0 | het | 83.8663 | 72.7617 | 98.9708 | 93.0529 | 577 | 216 | 577 | 6 | 1 | 16.6667 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 70.5882 | 54.5455 | 100.0000 | 96.7611 | 24 | 20 | 24 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l100_m2_e0 | homalt | 73.7841 | 58.5687 | 99.6795 | 89.4166 | 311 | 220 | 311 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | SNP | tv | map_l100_m2_e0 | * | 81.2147 | 68.6414 | 99.4272 | 84.5184 | 17183 | 7850 | 17184 | 99 | 19 | 19.1919 | |
| gduggal-bwaplat | SNP | tv | map_l100_m2_e0 | het | 85.2808 | 74.8051 | 99.1683 | 86.8061 | 11802 | 3975 | 11804 | 99 | 19 | 19.1919 | |
| gduggal-bwaplat | SNP | tv | map_l100_m2_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 91.3669 | 24 | 18 | 24 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | map_l100_m2_e0 | homalt | 73.5296 | 58.1398 | 100.0000 | 74.6665 | 5357 | 3857 | 5356 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | map_l100_m2_e0 | * | 90.5115 | 93.0138 | 88.1404 | 88.0002 | 3435 | 258 | 3441 | 463 | 191 | 41.2527 | |
| gduggal-bwavard | INDEL | * | map_l100_m2_e0 | het | 90.0912 | 98.0928 | 83.2966 | 90.0573 | 2263 | 44 | 2269 | 455 | 186 | 40.8791 | |
| gduggal-bwavard | INDEL | * | map_l100_m2_e0 | hetalt | 0.0000 | 1.6000 | 0.0000 | 0.0000 | 2 | 123 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | map_l100_m2_e0 | homalt | 95.9415 | 92.7835 | 99.3220 | 77.0294 | 1170 | 91 | 1172 | 8 | 5 | 62.5000 | |
| gduggal-bwavard | INDEL | C16_PLUS | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 25.0000 | 97.8836 | 0 | 0 | 1 | 3 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 25.0000 | 97.5460 | 0 | 0 | 1 | 3 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | C16_PLUS | map_l100_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | ti | map_l100_m2_e0 | * | 83.6206 | 72.1656 | 99.3982 | 81.0322 | 35333 | 13628 | 35344 | 214 | 67 | 31.3084 | |
| gduggal-bwaplat | SNP | ti | map_l100_m2_e0 | het | 87.1494 | 77.7546 | 99.1265 | 83.6970 | 23810 | 6812 | 23832 | 210 | 63 | 30.0000 | |
| gduggal-bwaplat | SNP | ti | map_l100_m2_e0 | hetalt | 72.3404 | 56.6667 | 100.0000 | 89.8204 | 17 | 13 | 17 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | map_l100_m2_e0 | homalt | 77.1723 | 62.8434 | 99.9652 | 71.1284 | 11506 | 6803 | 11495 | 4 | 4 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | map_l100_m2_e0 | * | 32.2581 | 19.2308 | 100.0000 | 96.7949 | 5 | 21 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l100_m2_e0 | het | 28.5714 | 16.6667 | 100.0000 | 97.3684 | 3 | 15 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l100_m2_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 91.6667 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 33.3333 | 20.0000 | 100.0000 | 96.6667 | 1 | 4 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l100_m2_e0 | * | 76.5957 | 62.0690 | 100.0000 | 93.5426 | 72 | 44 | 72 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l100_m2_e0 | het | 78.0000 | 63.9344 | 100.0000 | 94.7651 | 39 | 22 | 39 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 81.0811 | 68.1818 | 100.0000 | 89.9329 | 15 | 7 | 15 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l100_m2_e0 | homalt | 70.5882 | 54.5455 | 100.0000 | 91.8552 | 18 | 15 | 18 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | map_l100_m2_e0 | * | 82.8217 | 70.9791 | 99.4075 | 82.3292 | 52499 | 21465 | 52511 | 313 | 86 | 27.4760 | |
| gduggal-bwaplat | SNP | * | map_l100_m2_e0 | het | 86.5211 | 76.7517 | 99.1404 | 84.8771 | 35612 | 10787 | 35636 | 309 | 82 | 26.5372 | |
| gduggal-bwaplat | SNP | * | map_l100_m2_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 91.3669 | 24 | 18 | 24 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | map_l100_m2_e0 | homalt | 75.9766 | 61.2688 | 99.9763 | 72.3553 | 16863 | 10660 | 16851 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | SNP | ti | map_l100_m2_e0 | * | 99.3504 | 99.7181 | 98.9854 | 68.9913 | 48823 | 138 | 47903 | 491 | 32 | 6.5173 | |
| eyeh-varpipe | SNP | ti | map_l100_m2_e0 | het | 99.0330 | 99.6245 | 98.4486 | 71.1792 | 30507 | 115 | 29825 | 470 | 19 | 4.0426 | |
| eyeh-varpipe | SNP | ti | map_l100_m2_e0 | hetalt | 99.8165 | 100.0000 | 99.6337 | 65.9176 | 30 | 0 | 272 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | ti | map_l100_m2_e0 | homalt | 99.8811 | 99.8744 | 99.8878 | 64.4546 | 18286 | 23 | 17806 | 20 | 12 | 60.0000 | |
| gduggal-bwafb | INDEL | C16_PLUS | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C16_PLUS | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C16_PLUS | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C16_PLUS | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||