PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
30951-31000 / 86044 show all | |||||||||||||||
| gduggal-bwafb | SNP | * | map_l100_m2_e0 | hetalt | 98.7952 | 97.6190 | 100.0000 | 78.0749 | 41 | 1 | 41 | 0 | 0 | ||
| gduggal-bwafb | SNP | * | map_l100_m2_e0 | homalt | 99.5956 | 99.3169 | 99.8758 | 64.6135 | 27335 | 188 | 27335 | 34 | 20 | 58.8235 | |
| gduggal-bwafb | SNP | ti | map_l100_m2_e0 | * | 99.1045 | 99.1095 | 99.0994 | 68.4259 | 48525 | 436 | 48527 | 441 | 108 | 24.4898 | |
| gduggal-bwafb | SNP | ti | map_l100_m2_e0 | het | 98.8152 | 98.9975 | 98.6336 | 70.5993 | 30315 | 307 | 30317 | 420 | 95 | 22.6190 | |
| gduggal-bwafb | SNP | ti | map_l100_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.2066 | 30 | 0 | 30 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | map_l100_m2_e0 | homalt | 99.5892 | 99.2954 | 99.8846 | 63.9034 | 18180 | 129 | 18180 | 21 | 13 | 61.9048 | |
| gduggal-bwafb | INDEL | I1_5 | map_l100_m2_e0 | * | 97.5922 | 96.4181 | 98.7952 | 83.8737 | 1319 | 49 | 1312 | 16 | 5 | 31.2500 | |
| gduggal-bwafb | INDEL | I1_5 | map_l100_m2_e0 | het | 96.7924 | 94.9559 | 98.7013 | 83.9181 | 753 | 40 | 760 | 10 | 1 | 10.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 90.0000 | 81.8182 | 100.0000 | 93.3131 | 36 | 8 | 22 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I1_5 | map_l100_m2_e0 | homalt | 99.3440 | 99.8117 | 98.8806 | 82.8095 | 530 | 1 | 530 | 6 | 4 | 66.6667 | |
| gduggal-bwafb | INDEL | D1_5 | map_l100_m2_e0 | * | 97.6865 | 97.0757 | 98.3051 | 84.3163 | 1859 | 56 | 1856 | 32 | 6 | 18.7500 | |
| gduggal-bwafb | INDEL | D1_5 | map_l100_m2_e0 | het | 97.5348 | 97.2930 | 97.7778 | 83.2980 | 1222 | 34 | 1232 | 28 | 2 | 7.1429 | |
| gduggal-bwafb | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 79.9308 | 68.7500 | 95.4545 | 93.6047 | 33 | 15 | 21 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l100_m2_e0 | homalt | 99.1786 | 98.8543 | 99.5050 | 85.3976 | 604 | 7 | 603 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | map_l100_m2_e0 | * | 37.5000 | 23.0769 | 100.0000 | 86.3636 | 6 | 20 | 6 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | map_l100_m2_e0 | het | 36.3636 | 22.2222 | 100.0000 | 81.8182 | 4 | 14 | 4 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | map_l100_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 57.1429 | 40.0000 | 100.0000 | 90.0000 | 2 | 3 | 2 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C6_15 | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 58.3333 | 96.3526 | 0 | 0 | 7 | 5 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 44.4444 | 96.9595 | 0 | 0 | 4 | 5 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | C6_15 | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 90.9091 | 0 | 0 | 3 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | map_l100_m2_e0 | * | 69.2012 | 67.4242 | 71.0744 | 89.5419 | 178 | 86 | 172 | 70 | 58 | 82.8571 | |
| gduggal-bwavard | INDEL | D6_15 | map_l100_m2_e0 | het | 78.1594 | 99.2366 | 64.4670 | 90.5379 | 130 | 1 | 127 | 70 | 58 | 82.8571 | |
| gduggal-bwavard | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 68 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D6_15 | map_l100_m2_e0 | homalt | 84.9558 | 73.8462 | 100.0000 | 80.6034 | 48 | 17 | 45 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I16_PLUS | map_l100_m2_e0 | * | 69.3878 | 65.3846 | 73.9130 | 91.8149 | 17 | 9 | 17 | 6 | 3 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l100_m2_e0 | het | 76.9231 | 83.3333 | 71.4286 | 91.7969 | 15 | 3 | 15 | 6 | 3 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 57.1429 | 40.0000 | 100.0000 | 92.0000 | 2 | 3 | 2 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I1_5 | map_l100_m2_e0 | * | 93.9648 | 93.7865 | 94.1438 | 86.6818 | 1283 | 85 | 1270 | 79 | 38 | 48.1013 | |
| gduggal-bwavard | INDEL | I1_5 | map_l100_m2_e0 | het | 94.4176 | 97.9823 | 91.1032 | 89.6399 | 777 | 16 | 768 | 75 | 36 | 48.0000 | |
| gduggal-bwavard | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 44 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | I1_5 | map_l100_m2_e0 | homalt | 97.2112 | 95.2919 | 99.2095 | 74.5984 | 506 | 25 | 502 | 4 | 2 | 50.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l100_m2_e0 | * | 72.2467 | 70.6897 | 73.8739 | 87.7212 | 82 | 34 | 82 | 29 | 19 | 65.5172 | |
| gduggal-bwavard | INDEL | I6_15 | map_l100_m2_e0 | het | 78.9116 | 95.0820 | 67.4419 | 89.1960 | 58 | 3 | 58 | 28 | 19 | 67.8571 | |
| gduggal-bwavard | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 22 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | I6_15 | map_l100_m2_e0 | homalt | 82.7586 | 72.7273 | 96.0000 | 76.8519 | 24 | 9 | 24 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | D1_5 | map_l100_m2_e0 | * | 92.8526 | 95.1436 | 90.6694 | 86.8647 | 1822 | 93 | 1788 | 184 | 50 | 27.1739 | |
| gduggal-bwavard | INDEL | D1_5 | map_l100_m2_e0 | het | 92.5331 | 98.8057 | 87.0093 | 88.9275 | 1241 | 15 | 1219 | 182 | 48 | 26.3736 | |
| gduggal-bwavard | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 2.0833 | 0.0000 | 0.0000 | 1 | 47 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | map_l100_m2_e0 | homalt | 97.2307 | 94.9264 | 99.6497 | 75.8051 | 580 | 31 | 569 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | C1_5 | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 55.7895 | 95.3086 | 0 | 0 | 53 | 42 | 4 | 9.5238 | |
| gduggal-bwavard | INDEL | C1_5 | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 46.1538 | 95.6594 | 0 | 0 | 36 | 42 | 4 | 9.5238 | |
| gduggal-bwavard | INDEL | C1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | C1_5 | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 92.5439 | 0 | 0 | 17 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | map_l100_m2_e0 | * | 55.4705 | 58.8889 | 52.4272 | 93.3117 | 53 | 37 | 54 | 49 | 21 | 42.8571 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l100_m2_e0 | het | 61.8474 | 87.5000 | 47.8261 | 93.3765 | 42 | 6 | 44 | 48 | 20 | 41.6667 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 0.0000 | 3.8462 | 0.0000 | 0.0000 | 1 | 25 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 74.0741 | 62.5000 | 90.9091 | 92.7152 | 10 | 6 | 10 | 1 | 1 | 100.0000 | |