PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
30851-30900 / 86044 show all | |||||||||||||||
| qzeng-custom | SNP | * | map_l100_m2_e0 | hetalt | 81.6901 | 69.0476 | 100.0000 | 89.1791 | 29 | 13 | 29 | 0 | 0 | ||
| qzeng-custom | SNP | * | map_l100_m2_e0 | homalt | 87.8998 | 78.8141 | 99.3533 | 60.6693 | 21692 | 5831 | 21356 | 139 | 133 | 95.6835 | |
| qzeng-custom | SNP | ti | map_l100_m2_e0 | * | 87.7079 | 79.0936 | 98.4279 | 76.3519 | 38725 | 10236 | 38442 | 614 | 490 | 79.8046 | |
| qzeng-custom | SNP | ti | map_l100_m2_e0 | het | 87.5433 | 79.2078 | 97.8395 | 80.9563 | 24255 | 6367 | 24137 | 533 | 415 | 77.8612 | |
| qzeng-custom | SNP | ti | map_l100_m2_e0 | hetalt | 82.3529 | 70.0000 | 100.0000 | 88.3978 | 21 | 9 | 21 | 0 | 0 | ||
| qzeng-custom | SNP | ti | map_l100_m2_e0 | homalt | 87.9965 | 78.9175 | 99.4361 | 59.4553 | 14449 | 3860 | 14284 | 81 | 75 | 92.5926 | |
| qzeng-custom | SNP | tv | map_l100_m2_e0 | * | 88.2470 | 80.1862 | 98.1096 | 78.5989 | 20073 | 4960 | 20033 | 386 | 305 | 79.0155 | |
| qzeng-custom | SNP | tv | map_l100_m2_e0 | het | 88.5810 | 81.1371 | 97.5288 | 82.6321 | 12801 | 2976 | 12787 | 324 | 244 | 75.3086 | |
| qzeng-custom | SNP | tv | map_l100_m2_e0 | hetalt | 81.6901 | 69.0476 | 100.0000 | 89.1791 | 29 | 13 | 29 | 0 | 0 | ||
| qzeng-custom | SNP | tv | map_l100_m2_e0 | homalt | 87.6918 | 78.6086 | 99.1482 | 62.9624 | 7243 | 1971 | 7217 | 62 | 61 | 98.3871 | |
| raldana-dualsentieon | INDEL | * | map_l100_m2_e0 | * | 97.9722 | 97.4005 | 98.5507 | 83.3204 | 3597 | 96 | 3604 | 53 | 13 | 24.5283 | |
| raldana-dualsentieon | INDEL | * | map_l100_m2_e0 | het | 97.6490 | 97.1391 | 98.1643 | 83.4371 | 2241 | 66 | 2246 | 42 | 8 | 19.0476 | |
| raldana-dualsentieon | INDEL | * | map_l100_m2_e0 | hetalt | 93.6170 | 88.0000 | 100.0000 | 84.7826 | 110 | 15 | 112 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | map_l100_m2_e0 | homalt | 98.9674 | 98.8105 | 99.1249 | 82.9559 | 1246 | 15 | 1246 | 11 | 5 | 45.4545 | |
| qzeng-custom | INDEL | I6_15 | map_l100_m2_e0 | * | 56.8558 | 74.1379 | 46.1078 | 77.3098 | 86 | 30 | 154 | 180 | 4 | 2.2222 | |
| qzeng-custom | INDEL | I6_15 | map_l100_m2_e0 | het | 52.8122 | 77.0492 | 40.1747 | 78.2319 | 47 | 14 | 92 | 137 | 4 | 2.9197 | |
| qzeng-custom | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 77.7778 | 63.6364 | 100.0000 | 80.7229 | 14 | 8 | 16 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_l100_m2_e0 | homalt | 61.4480 | 75.7576 | 51.6854 | 73.5905 | 25 | 8 | 46 | 43 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l100_m2_e0 | * | 77.4922 | 85.9848 | 70.5263 | 85.7250 | 227 | 37 | 268 | 112 | 12 | 10.7143 | |
| qzeng-custom | INDEL | D6_15 | map_l100_m2_e0 | het | 77.9177 | 88.5496 | 69.5652 | 87.5000 | 116 | 15 | 192 | 84 | 9 | 10.7143 | |
| qzeng-custom | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 0.0000 | 79.4118 | 0.0000 | 0.0000 | 54 | 14 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | map_l100_m2_e0 | homalt | 79.7203 | 87.6923 | 73.0769 | 77.0925 | 57 | 8 | 76 | 28 | 3 | 10.7143 | |
| qzeng-custom | INDEL | I1_5 | map_l100_m2_e0 | * | 81.9098 | 72.2953 | 94.4737 | 87.2301 | 989 | 379 | 1436 | 84 | 16 | 19.0476 | |
| qzeng-custom | INDEL | I1_5 | map_l100_m2_e0 | het | 80.9908 | 72.0050 | 92.5390 | 89.7242 | 571 | 222 | 831 | 67 | 13 | 19.4030 | |
| qzeng-custom | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 87.1795 | 77.2727 | 100.0000 | 90.2439 | 34 | 10 | 20 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | map_l100_m2_e0 | homalt | 82.9231 | 72.3164 | 97.1761 | 79.6553 | 384 | 147 | 585 | 17 | 3 | 17.6471 | |
| mlin-fermikit | SNP | * | map_l100_m2_e0 | * | 72.7370 | 60.6281 | 90.8897 | 55.5979 | 44843 | 29121 | 44835 | 4494 | 3956 | 88.0285 | |
| mlin-fermikit | SNP | * | map_l100_m2_e0 | het | 71.6803 | 56.3051 | 98.6068 | 57.9033 | 26125 | 20274 | 26117 | 369 | 11 | 2.9810 | |
| mlin-fermikit | SNP | * | map_l100_m2_e0 | hetalt | 57.6271 | 40.4762 | 100.0000 | 71.6667 | 17 | 25 | 17 | 0 | 0 | ||
| mlin-fermikit | SNP | * | map_l100_m2_e0 | homalt | 74.2855 | 67.9468 | 81.9285 | 52.5634 | 18701 | 8822 | 18701 | 4125 | 3945 | 95.6364 | |
| ndellapenna-hhga | INDEL | * | map_l100_m2_e0 | * | 97.3112 | 96.9402 | 97.6852 | 97.7103 | 3580 | 113 | 3587 | 85 | 38 | 44.7059 | |
| ndellapenna-hhga | INDEL | * | map_l100_m2_e0 | het | 97.3029 | 97.3992 | 97.2067 | 83.9816 | 2247 | 60 | 2262 | 65 | 26 | 40.0000 | |
| ndellapenna-hhga | INDEL | * | map_l100_m2_e0 | hetalt | 83.7547 | 75.2000 | 94.5055 | 89.4798 | 94 | 31 | 86 | 5 | 2 | 40.0000 | |
| ndellapenna-hhga | INDEL | * | map_l100_m2_e0 | homalt | 98.5288 | 98.2554 | 98.8038 | 83.0311 | 1239 | 22 | 1239 | 15 | 10 | 66.6667 | |
| ndellapenna-hhga | INDEL | C16_PLUS | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C16_PLUS | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C16_PLUS | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C16_PLUS | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C1_5 | map_l100_m2_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C1_5 | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C1_5 | map_l100_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | tv | map_l100_m2_e0 | * | 71.0756 | 59.1180 | 89.0970 | 57.6083 | 14799 | 10234 | 14791 | 1810 | 1594 | 88.0663 | |
| mlin-fermikit | SNP | tv | map_l100_m2_e0 | het | 70.4610 | 54.8457 | 98.5073 | 60.6122 | 8653 | 7124 | 8645 | 131 | 2 | 1.5267 | |
| mlin-fermikit | SNP | tv | map_l100_m2_e0 | hetalt | 57.6271 | 40.4762 | 100.0000 | 71.6667 | 17 | 25 | 17 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | map_l100_m2_e0 | homalt | 72.0127 | 66.5183 | 78.4964 | 53.5791 | 6129 | 3085 | 6129 | 1679 | 1592 | 94.8183 | |
| mlin-fermikit | INDEL | I1_5 | map_l100_m2_e0 | * | 72.7673 | 60.4532 | 91.3812 | 78.4780 | 827 | 541 | 827 | 78 | 68 | 87.1795 | |
| mlin-fermikit | INDEL | I1_5 | map_l100_m2_e0 | het | 71.6654 | 57.2509 | 95.7806 | 78.7349 | 454 | 339 | 454 | 20 | 12 | 60.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 64.6154 | 47.7273 | 100.0000 | 87.8613 | 21 | 23 | 21 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | map_l100_m2_e0 | homalt | 74.8140 | 66.2900 | 85.8537 | 77.2601 | 352 | 179 | 352 | 58 | 56 | 96.5517 | |