PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
30801-30850 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | SNP | ti | map_l100_m2_e0 | * | 99.3403 | 99.3525 | 99.3281 | 64.7470 | 48644 | 317 | 48637 | 329 | 19 | 5.7751 | |
| raldana-dualsentieon | SNP | ti | map_l100_m2_e0 | het | 99.0553 | 99.1379 | 98.9728 | 67.5282 | 30358 | 264 | 30351 | 315 | 6 | 1.9048 | |
| raldana-dualsentieon | SNP | ti | map_l100_m2_e0 | hetalt | 98.3607 | 100.0000 | 96.7742 | 65.1685 | 30 | 0 | 30 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | ti | map_l100_m2_e0 | homalt | 99.8196 | 99.7105 | 99.9288 | 58.8267 | 18256 | 53 | 18256 | 13 | 12 | 92.3077 | |
| rpoplin-dv42 | INDEL | C6_15 | map_l100_m2_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | C6_15 | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C6_15 | map_l100_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | C6_15 | map_l100_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | I16_PLUS | map_l100_m2_e0 | * | 89.7959 | 84.6154 | 95.6522 | 81.6000 | 22 | 4 | 22 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_l100_m2_e0 | het | 91.4286 | 88.8889 | 94.1176 | 76.7123 | 16 | 2 | 16 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_l100_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 87.5000 | 2 | 1 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 88.8889 | 80.0000 | 100.0000 | 88.8889 | 4 | 1 | 4 | 0 | 0 | ||
| rpoplin-dv42 | SNP | * | map_l100_m2_e0 | * | 99.4070 | 99.2740 | 99.5404 | 65.1757 | 73427 | 537 | 73416 | 339 | 198 | 58.4071 | |
| rpoplin-dv42 | SNP | * | map_l100_m2_e0 | het | 99.2759 | 99.1530 | 99.3992 | 65.9847 | 46006 | 393 | 45994 | 278 | 141 | 50.7194 | |
| rpoplin-dv42 | SNP | * | map_l100_m2_e0 | hetalt | 96.5517 | 100.0000 | 93.3333 | 85.0993 | 42 | 0 | 42 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | * | map_l100_m2_e0 | homalt | 99.6325 | 99.4768 | 99.7886 | 63.6376 | 27379 | 144 | 27380 | 58 | 54 | 93.1034 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m2_e0 | * | 98.7206 | 98.6423 | 98.7990 | 83.5904 | 1889 | 26 | 1892 | 23 | 9 | 39.1304 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m2_e0 | het | 98.4460 | 98.2484 | 98.6443 | 83.0632 | 1234 | 22 | 1237 | 17 | 4 | 23.5294 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 97.8723 | 95.8333 | 100.0000 | 92.3205 | 46 | 2 | 46 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m2_e0 | homalt | 99.3475 | 99.6727 | 99.0244 | 83.2288 | 609 | 2 | 609 | 6 | 5 | 83.3333 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l100_m2_e0 | * | 95.0570 | 94.6970 | 95.4198 | 86.1887 | 250 | 14 | 250 | 12 | 6 | 50.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l100_m2_e0 | het | 94.8148 | 97.7099 | 92.0863 | 88.5691 | 128 | 3 | 128 | 11 | 6 | 54.5455 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 92.9134 | 86.7647 | 100.0000 | 73.6607 | 59 | 9 | 59 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | map_l100_m2_e0 | homalt | 97.6744 | 96.9231 | 98.4375 | 85.9956 | 63 | 2 | 63 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | SNP | ti | map_l100_m2_e0 | * | 99.4660 | 99.2933 | 99.6392 | 64.7198 | 48615 | 346 | 48608 | 176 | 120 | 68.1818 | |
| rpoplin-dv42 | SNP | ti | map_l100_m2_e0 | het | 99.3487 | 99.1444 | 99.5539 | 65.6465 | 30360 | 262 | 30352 | 136 | 82 | 60.2941 | |
| rpoplin-dv42 | SNP | ti | map_l100_m2_e0 | hetalt | 96.7742 | 100.0000 | 93.7500 | 84.0796 | 30 | 0 | 30 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | SNP | ti | map_l100_m2_e0 | homalt | 99.6664 | 99.5412 | 99.7919 | 62.9736 | 18225 | 84 | 18226 | 38 | 36 | 94.7368 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m2_e0 | * | 83.8323 | 77.7778 | 90.9091 | 89.6644 | 70 | 20 | 70 | 7 | 3 | 42.8571 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m2_e0 | het | 84.7826 | 81.2500 | 88.6364 | 91.1824 | 39 | 9 | 39 | 5 | 2 | 40.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 79.0698 | 65.3846 | 100.0000 | 67.3077 | 17 | 9 | 17 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 87.5000 | 87.5000 | 87.5000 | 91.7526 | 14 | 2 | 14 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m2_e0 | * | 98.5327 | 98.0994 | 98.9698 | 83.9986 | 1342 | 26 | 1345 | 14 | 7 | 50.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m2_e0 | het | 98.2852 | 97.4779 | 99.1060 | 84.2645 | 773 | 20 | 776 | 7 | 5 | 71.4286 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 93.1818 | 93.1818 | 93.1818 | 91.8519 | 41 | 3 | 41 | 3 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m2_e0 | homalt | 99.3415 | 99.4350 | 99.2481 | 82.1297 | 528 | 3 | 528 | 4 | 2 | 50.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l100_m2_e0 | * | 93.2735 | 89.6552 | 97.1963 | 85.5014 | 104 | 12 | 104 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l100_m2_e0 | het | 91.3793 | 86.8852 | 96.3636 | 85.8612 | 53 | 8 | 53 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 97.7778 | 100.0000 | 95.6522 | 79.4643 | 22 | 0 | 22 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l100_m2_e0 | homalt | 93.5484 | 87.8788 | 100.0000 | 87.7637 | 29 | 4 | 29 | 0 | 0 | ||
| rpoplin-dv42 | SNP | tv | map_l100_m2_e0 | * | 99.2885 | 99.2370 | 99.3401 | 66.0825 | 24842 | 191 | 24838 | 165 | 80 | 48.4848 | |
| rpoplin-dv42 | SNP | tv | map_l100_m2_e0 | het | 99.1350 | 99.1697 | 99.1004 | 66.6194 | 15646 | 131 | 15642 | 142 | 59 | 41.5493 | |
| rpoplin-dv42 | SNP | tv | map_l100_m2_e0 | hetalt | 96.5517 | 100.0000 | 93.3333 | 85.0993 | 42 | 0 | 42 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l100_m2_e0 | homalt | 99.5649 | 99.3488 | 99.7820 | 64.8909 | 9154 | 60 | 9154 | 20 | 18 | 90.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l100_m2_e0 | * | 52.5373 | 61.5385 | 45.8333 | 82.9384 | 16 | 10 | 33 | 39 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l100_m2_e0 | het | 52.9672 | 72.2222 | 41.8182 | 80.8362 | 13 | 5 | 23 | 32 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 100.0000 | 90.0000 | 0 | 3 | 3 | 0 | 0 | ||
| qzeng-custom | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 54.5455 | 60.0000 | 50.0000 | 86.6667 | 3 | 2 | 7 | 7 | 0 | 0.0000 | |
| qzeng-custom | SNP | * | map_l100_m2_e0 | * | 87.8989 | 79.4670 | 98.3325 | 77.0630 | 58777 | 15187 | 58084 | 985 | 789 | 80.1015 | |
| qzeng-custom | SNP | * | map_l100_m2_e0 | het | 87.9050 | 79.8638 | 97.7467 | 81.4691 | 37056 | 9343 | 36699 | 846 | 656 | 77.5414 | |