PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
30701-30750 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | I16_PLUS | map_l100_m2_e0 | * | 60.4651 | 50.0000 | 76.4706 | 84.8214 | 13 | 13 | 13 | 4 | 4 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l100_m2_e0 | het | 70.5882 | 66.6667 | 75.0000 | 82.9787 | 12 | 6 | 12 | 4 | 4 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 33.3333 | 20.0000 | 100.0000 | 94.4444 | 1 | 4 | 1 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | map_l100_m2_e0 | * | 67.0051 | 56.8966 | 81.4815 | 86.4775 | 66 | 50 | 66 | 15 | 15 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l100_m2_e0 | het | 71.7949 | 68.8525 | 75.0000 | 88.1104 | 42 | 19 | 42 | 14 | 14 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 22 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I6_15 | map_l100_m2_e0 | homalt | 82.7586 | 72.7273 | 96.0000 | 80.4688 | 24 | 9 | 24 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | SNP | * | map_l100_m2_e0 | * | 98.0473 | 97.7530 | 98.3434 | 71.6108 | 72302 | 1662 | 72304 | 1218 | 332 | 27.2578 | |
| jpowers-varprowl | SNP | * | map_l100_m2_e0 | het | 97.3254 | 97.0883 | 97.5636 | 74.0402 | 45048 | 1351 | 45050 | 1125 | 264 | 23.4667 | |
| jpowers-varprowl | SNP | * | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 42 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | * | map_l100_m2_e0 | homalt | 99.3403 | 99.0226 | 99.6599 | 66.2832 | 27254 | 269 | 27254 | 93 | 68 | 73.1183 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m2_e0 | * | 83.1183 | 81.1111 | 85.2273 | 88.2353 | 73 | 17 | 75 | 13 | 6 | 46.1538 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m2_e0 | het | 85.8721 | 89.5833 | 82.4561 | 89.4834 | 43 | 5 | 47 | 10 | 5 | 50.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 75.1105 | 65.3846 | 88.2353 | 72.5806 | 17 | 9 | 15 | 2 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 86.6667 | 81.2500 | 92.8571 | 90.2778 | 13 | 3 | 13 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l100_m2_e0 | * | 98.7887 | 98.3918 | 99.1888 | 84.1125 | 1346 | 22 | 1345 | 11 | 2 | 18.1818 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l100_m2_e0 | het | 98.5410 | 97.9823 | 99.1060 | 84.5073 | 777 | 16 | 776 | 7 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 98.8506 | 97.7273 | 100.0000 | 90.7725 | 43 | 1 | 43 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I1_5 | map_l100_m2_e0 | homalt | 99.1517 | 99.0584 | 99.2453 | 82.4212 | 526 | 5 | 526 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l100_m2_e0 | * | 95.1542 | 93.1034 | 97.2973 | 86.5942 | 108 | 8 | 108 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l100_m2_e0 | het | 95.0820 | 95.0820 | 95.0820 | 86.6812 | 58 | 3 | 58 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 85.6115 | 20 | 2 | 20 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | map_l100_m2_e0 | homalt | 95.2381 | 90.9091 | 100.0000 | 87.0130 | 30 | 3 | 30 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | map_l100_m2_e0 | * | 99.3385 | 98.8697 | 99.8117 | 63.7221 | 73128 | 836 | 73130 | 138 | 63 | 45.6522 | |
| ndellapenna-hhga | SNP | * | map_l100_m2_e0 | het | 99.0800 | 98.4181 | 99.7510 | 64.4052 | 45665 | 734 | 45667 | 114 | 41 | 35.9649 | |
| ndellapenna-hhga | SNP | * | map_l100_m2_e0 | hetalt | 91.1392 | 85.7143 | 97.2973 | 79.7814 | 36 | 6 | 36 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | * | map_l100_m2_e0 | homalt | 99.7835 | 99.6512 | 99.9162 | 62.4810 | 27427 | 96 | 27427 | 23 | 21 | 91.3043 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m2_e0 | * | 80.0000 | 76.9231 | 83.3333 | 90.6977 | 20 | 6 | 20 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m2_e0 | het | 83.3333 | 83.3333 | 83.3333 | 89.0909 | 15 | 3 | 15 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 87.5000 | 3 | 0 | 3 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 50.0000 | 40.0000 | 66.6667 | 95.6522 | 2 | 3 | 2 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | C6_15 | map_l100_m2_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C6_15 | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C6_15 | map_l100_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C6_15 | map_l100_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | D1_5 | map_l100_m2_e0 | * | 97.6927 | 97.2846 | 98.1043 | 82.7144 | 1863 | 52 | 1863 | 36 | 17 | 47.2222 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l100_m2_e0 | het | 97.8087 | 97.6911 | 97.9266 | 82.2279 | 1227 | 29 | 1228 | 26 | 9 | 34.6154 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 75.5177 | 64.5833 | 90.9091 | 92.6829 | 31 | 17 | 30 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l100_m2_e0 | homalt | 98.9370 | 99.0180 | 98.8562 | 82.4087 | 605 | 6 | 605 | 7 | 6 | 85.7143 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l100_m2_e0 | * | 90.3148 | 89.3939 | 91.2548 | 85.9433 | 236 | 28 | 240 | 23 | 11 | 47.8261 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l100_m2_e0 | het | 93.1342 | 96.9466 | 89.6104 | 87.6997 | 127 | 4 | 138 | 16 | 8 | 50.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 76.7322 | 67.6471 | 88.6364 | 74.2690 | 46 | 22 | 39 | 5 | 2 | 40.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l100_m2_e0 | homalt | 96.9231 | 96.9231 | 96.9231 | 85.4911 | 63 | 2 | 63 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | INDEL | C1_5 | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | C1_5 | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | C1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | C1_5 | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | D1_5 | map_l100_m2_e0 | * | 98.5570 | 98.0157 | 99.1043 | 82.2749 | 1877 | 38 | 1881 | 17 | 5 | 29.4118 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l100_m2_e0 | het | 98.3621 | 97.9299 | 98.7981 | 81.8710 | 1230 | 26 | 1233 | 15 | 3 | 20.0000 | |