PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
30401-30450 / 86044 show all | |||||||||||||||
| astatham-gatk | SNP | tv | map_l100_m2_e0 | het | 86.7029 | 76.7066 | 99.6951 | 76.6657 | 12102 | 3675 | 12098 | 37 | 10 | 27.0270 | |
| astatham-gatk | SNP | tv | map_l100_m2_e0 | hetalt | 98.7952 | 97.6190 | 100.0000 | 72.2973 | 41 | 1 | 41 | 0 | 0 | ||
| astatham-gatk | SNP | tv | map_l100_m2_e0 | homalt | 99.5809 | 99.2728 | 99.8908 | 61.7518 | 9147 | 67 | 9147 | 10 | 6 | 60.0000 | |
| asubramanian-gatk | INDEL | C1_5 | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 97.9592 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C1_5 | map_l100_m2_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | C1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| asubramanian-gatk | INDEL | C1_5 | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 95.2381 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C6_15 | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 92.0000 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C6_15 | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 90.4762 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C6_15 | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| asubramanian-gatk | INDEL | C6_15 | map_l100_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | * | 87.1508 | 86.6667 | 87.6404 | 95.9118 | 78 | 12 | 78 | 11 | 3 | 27.2727 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | het | 84.4646 | 87.5000 | 81.6327 | 96.8161 | 42 | 6 | 40 | 9 | 2 | 22.2222 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 87.6588 | 80.7692 | 95.8333 | 80.1653 | 21 | 5 | 23 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 93.7500 | 93.7500 | 93.7500 | 96.9052 | 15 | 1 | 15 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D1_5 | map_l100_m2_e0 | * | 93.0444 | 89.7128 | 96.6330 | 87.5446 | 1718 | 197 | 1722 | 60 | 7 | 11.6667 | |
| asubramanian-gatk | INDEL | C16_PLUS | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 97.6190 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C16_PLUS | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 96.6667 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C16_PLUS | map_l100_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | INDEL | C16_PLUS | map_l100_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| astatham-gatk | SNP | ti | map_l100_m2_e0 | * | 92.0782 | 85.4292 | 99.8496 | 69.7884 | 41827 | 7134 | 41820 | 63 | 36 | 57.1429 | |
| astatham-gatk | SNP | ti | map_l100_m2_e0 | het | 86.9897 | 77.0982 | 99.7928 | 74.7072 | 23609 | 7013 | 23602 | 49 | 23 | 46.9388 | |
| astatham-gatk | SNP | ti | map_l100_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 69.6970 | 30 | 0 | 30 | 0 | 0 | ||
| astatham-gatk | SNP | ti | map_l100_m2_e0 | homalt | 99.6302 | 99.3391 | 99.9231 | 59.5727 | 18188 | 121 | 18188 | 14 | 13 | 92.8571 | |
| asubramanian-gatk | INDEL | * | map_l100_m2_e0 | * | 92.1174 | 87.8960 | 96.7646 | 96.1178 | 3246 | 447 | 3260 | 109 | 17 | 15.5963 | |
| asubramanian-gatk | INDEL | * | map_l100_m2_e0 | het | 89.6413 | 84.6987 | 95.1965 | 90.0770 | 1954 | 353 | 1962 | 99 | 13 | 13.1313 | |
| asubramanian-gatk | INDEL | * | map_l100_m2_e0 | hetalt | 94.6259 | 91.2000 | 98.3193 | 88.0762 | 114 | 11 | 117 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | * | map_l100_m2_e0 | homalt | 96.2820 | 93.4179 | 99.3272 | 85.6349 | 1178 | 83 | 1181 | 8 | 3 | 37.5000 | |
| anovak-vg | INDEL | C16_PLUS | map_l100_m2_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | C16_PLUS | map_l100_m2_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | C16_PLUS | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | C16_PLUS | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | D16_PLUS | map_l100_m2_e0 | * | 52.2346 | 37.7778 | 84.6154 | 88.4956 | 34 | 56 | 33 | 6 | 5 | 83.3333 | |
| anovak-vg | INDEL | D16_PLUS | map_l100_m2_e0 | het | 61.7131 | 47.9167 | 86.6667 | 86.2385 | 23 | 25 | 26 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 0.0000 | 7.6923 | 0.0000 | 0.0000 | 2 | 24 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 65.2850 | 56.2500 | 77.7778 | 92.5620 | 9 | 7 | 7 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | map_l100_m2_e0 | * | 84.6007 | 85.6397 | 83.5866 | 84.4811 | 1640 | 275 | 1650 | 324 | 122 | 37.6543 | |
| anovak-vg | INDEL | D1_5 | map_l100_m2_e0 | het | 83.2747 | 87.6592 | 79.3079 | 85.1214 | 1101 | 155 | 1123 | 293 | 93 | 31.7406 | |
| anovak-vg | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 31.2500 | 0.0000 | 0.0000 | 15 | 33 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | map_l100_m2_e0 | homalt | 89.8935 | 85.7610 | 94.4444 | 82.5788 | 524 | 87 | 527 | 31 | 29 | 93.5484 | |
| anovak-vg | INDEL | D6_15 | map_l100_m2_e0 | * | 69.8453 | 62.5000 | 79.1469 | 85.8199 | 165 | 99 | 167 | 44 | 27 | 61.3636 | |
| anovak-vg | INDEL | D6_15 | map_l100_m2_e0 | het | 75.7043 | 77.0992 | 74.3590 | 85.9586 | 101 | 30 | 116 | 40 | 23 | 57.5000 | |
| anovak-vg | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 0.0000 | 22.0588 | 0.0000 | 0.0000 | 15 | 53 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | map_l100_m2_e0 | homalt | 83.1614 | 75.3846 | 92.7273 | 85.4111 | 49 | 16 | 51 | 4 | 4 | 100.0000 | |
| anovak-vg | INDEL | I16_PLUS | map_l100_m2_e0 | * | 21.0526 | 15.3846 | 33.3333 | 82.3529 | 4 | 22 | 4 | 8 | 6 | 75.0000 | |
| anovak-vg | INDEL | I16_PLUS | map_l100_m2_e0 | het | 10.5263 | 5.5556 | 100.0000 | 92.3077 | 1 | 17 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | I16_PLUS | map_l100_m2_e0 | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 1 | 2 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 32.4324 | 40.0000 | 27.2727 | 80.0000 | 2 | 3 | 3 | 8 | 6 | 75.0000 | |
| anovak-vg | INDEL | C6_15 | map_l100_m2_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | C6_15 | map_l100_m2_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||