PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
30301-30350 / 86044 show all | |||||||||||||||
| anovak-vg | SNP | * | map_l100_m2_e0 | * | 84.2603 | 88.9000 | 80.0809 | 71.0026 | 65754 | 8210 | 64960 | 16158 | 3566 | 22.0696 | |
| anovak-vg | SNP | * | map_l100_m2_e0 | het | 80.6158 | 91.0795 | 72.3085 | 73.6388 | 42260 | 4139 | 41790 | 16004 | 3433 | 21.4509 | |
| anovak-vg | SNP | * | map_l100_m2_e0 | hetalt | 0.0000 | 30.9524 | 0.0000 | 0.0000 | 13 | 29 | 0 | 0 | 0 | ||
| anovak-vg | SNP | * | map_l100_m2_e0 | homalt | 91.7943 | 85.3141 | 99.3397 | 61.4498 | 23481 | 4042 | 23170 | 154 | 133 | 86.3636 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_l100_m2_e0 | * | 86.2745 | 84.6154 | 88.0000 | 96.2631 | 22 | 4 | 22 | 3 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_l100_m2_e0 | het | 85.7143 | 83.3333 | 88.2353 | 95.7393 | 15 | 3 | 15 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_l100_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 94.8718 | 2 | 1 | 2 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 90.9091 | 100.0000 | 83.3333 | 97.4026 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | * | map_l100_m2_e0 | * | 60.9821 | 43.8984 | 99.8339 | 85.3165 | 32469 | 41495 | 32463 | 54 | 14 | 25.9259 | |
| asubramanian-gatk | SNP | * | map_l100_m2_e0 | het | 63.7840 | 46.8782 | 99.7614 | 87.0574 | 21751 | 24648 | 21745 | 52 | 14 | 26.9231 | |
| asubramanian-gatk | SNP | * | map_l100_m2_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 91.3043 | 14 | 28 | 14 | 0 | 0 | ||
| asubramanian-gatk | SNP | * | map_l100_m2_e0 | homalt | 55.9994 | 38.8911 | 99.9813 | 79.7534 | 10704 | 16819 | 10704 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | ti | map_l100_m2_e0 | * | 62.4314 | 45.4117 | 99.8563 | 84.1830 | 22234 | 26727 | 22230 | 32 | 12 | 37.5000 | |
| asubramanian-gatk | SNP | ti | map_l100_m2_e0 | het | 65.0317 | 48.2333 | 99.7838 | 86.0511 | 14770 | 15852 | 14766 | 32 | 12 | 37.5000 | |
| asubramanian-gatk | SNP | ti | map_l100_m2_e0 | hetalt | 53.6585 | 36.6667 | 100.0000 | 89.6226 | 11 | 19 | 11 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | map_l100_m2_e0 | homalt | 57.8604 | 40.7068 | 100.0000 | 78.4309 | 7453 | 10856 | 7453 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | map_l100_m2_e0 | * | 58.0625 | 40.9300 | 99.8635 | 87.2733 | 10246 | 14787 | 10244 | 14 | 2 | 14.2857 | |
| asubramanian-gatk | SNP | tv | map_l100_m2_e0 | het | 61.3148 | 44.2480 | 99.8141 | 88.7563 | 6981 | 8796 | 6979 | 13 | 2 | 15.3846 | |
| asubramanian-gatk | SNP | tv | map_l100_m2_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 91.2500 | 14 | 28 | 14 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | map_l100_m2_e0 | homalt | 52.1579 | 35.2833 | 99.9692 | 82.1867 | 3251 | 5963 | 3251 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l100_m2_e0 | * | 93.2365 | 88.7931 | 98.1481 | 89.7045 | 103 | 13 | 106 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l100_m2_e0 | het | 92.3641 | 88.5246 | 96.5517 | 90.5383 | 54 | 7 | 56 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 82.0513 | 20 | 2 | 21 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l100_m2_e0 | homalt | 93.5484 | 87.8788 | 100.0000 | 90.9091 | 29 | 4 | 29 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_l100_m2_e0 | het | 91.0865 | 87.4204 | 95.0735 | 88.4658 | 1098 | 158 | 1100 | 57 | 6 | 10.5263 | |
| asubramanian-gatk | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 96.7742 | 93.7500 | 100.0000 | 91.2381 | 45 | 3 | 46 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_l100_m2_e0 | homalt | 96.7204 | 94.1080 | 99.4819 | 84.5641 | 575 | 36 | 576 | 3 | 1 | 33.3333 | |
| asubramanian-gatk | INDEL | D6_15 | map_l100_m2_e0 | * | 93.3594 | 90.5303 | 96.3710 | 89.2314 | 239 | 25 | 239 | 9 | 3 | 33.3333 | |
| asubramanian-gatk | INDEL | D6_15 | map_l100_m2_e0 | het | 91.8288 | 90.0763 | 93.6508 | 91.9796 | 118 | 13 | 118 | 8 | 2 | 25.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 95.4545 | 92.6471 | 98.4375 | 74.5020 | 63 | 5 | 63 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_l100_m2_e0 | homalt | 94.3089 | 89.2308 | 100.0000 | 87.9418 | 58 | 7 | 58 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | map_l100_m2_e0 | * | 91.2346 | 85.1608 | 98.2412 | 87.9589 | 1165 | 203 | 1173 | 21 | 4 | 19.0476 | |
| asubramanian-gatk | INDEL | I1_5 | map_l100_m2_e0 | het | 87.2148 | 79.0668 | 97.2350 | 90.0428 | 627 | 166 | 633 | 18 | 2 | 11.1111 | |
| asubramanian-gatk | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 96.5517 | 95.4545 | 97.6744 | 90.1376 | 42 | 2 | 42 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l100_m2_e0 | homalt | 96.4050 | 93.4087 | 99.6000 | 83.0048 | 496 | 35 | 498 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | C1_5 | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C1_5 | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | C1_5 | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | INDEL | D1_5 | map_l100_m2_e0 | * | 98.8043 | 99.1123 | 98.4982 | 84.6307 | 1898 | 17 | 1902 | 29 | 6 | 20.6897 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l100_m2_e0 | het | 98.5784 | 99.2038 | 97.9608 | 84.7707 | 1246 | 10 | 1249 | 26 | 4 | 15.3846 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 94.6463 | 91.6667 | 97.8261 | 89.7092 | 44 | 4 | 45 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l100_m2_e0 | homalt | 99.5905 | 99.5090 | 99.6721 | 83.7116 | 608 | 3 | 608 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l100_m2_e0 | * | 96.2121 | 96.2121 | 96.2121 | 87.5589 | 254 | 10 | 254 | 10 | 2 | 20.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l100_m2_e0 | het | 95.5224 | 97.7099 | 93.4307 | 90.1722 | 128 | 3 | 128 | 9 | 2 | 22.2222 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 95.4545 | 92.6471 | 98.4375 | 72.7660 | 63 | 5 | 63 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l100_m2_e0 | homalt | 98.4375 | 96.9231 | 100.0000 | 87.2211 | 63 | 2 | 63 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | map_l100_m2_e0 | * | 90.5660 | 92.3077 | 88.8889 | 96.0294 | 24 | 2 | 24 | 3 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l100_m2_e0 | het | 94.4444 | 94.4444 | 94.4444 | 95.1351 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_l100_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 93.5484 | 2 | 1 | 2 | 0 | 0 | ||