PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
30251-30300 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 0.0000 | 38.2353 | 0.0000 | 0.0000 | 26 | 42 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | map_l100_m2_e0 | homalt | 58.4551 | 43.0769 | 90.9091 | 76.7606 | 28 | 37 | 30 | 3 | 3 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l100_m2_e0 | * | 13.7681 | 7.6923 | 65.5172 | 77.6923 | 2 | 24 | 19 | 10 | 8 | 80.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l100_m2_e0 | het | 19.0000 | 11.1111 | 65.5172 | 77.3438 | 2 | 16 | 19 | 10 | 8 | 80.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 5 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | I1_5 | map_l100_m2_e0 | * | 90.7740 | 93.4211 | 88.2728 | 86.1304 | 1278 | 90 | 1799 | 239 | 111 | 46.4435 | |
| gduggal-snapvard | INDEL | I1_5 | map_l100_m2_e0 | het | 89.8150 | 98.4868 | 82.5468 | 88.8499 | 781 | 12 | 1102 | 233 | 108 | 46.3519 | |
| gduggal-snapvard | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 40.9091 | 0.0000 | 0.0000 | 18 | 26 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | map_l100_m2_e0 | homalt | 94.4658 | 90.2072 | 99.1465 | 74.1639 | 479 | 52 | 697 | 6 | 3 | 50.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l100_m2_e0 | * | 89.1114 | 94.4125 | 84.3738 | 85.7309 | 1808 | 107 | 2284 | 423 | 173 | 40.8983 | |
| gduggal-snapvard | INDEL | D1_5 | map_l100_m2_e0 | het | 87.6928 | 97.6911 | 79.5511 | 87.5070 | 1227 | 29 | 1595 | 410 | 161 | 39.2683 | |
| gduggal-snapvard | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 52.0833 | 0.0000 | 0.0000 | 25 | 23 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l100_m2_e0 | homalt | 94.4381 | 90.9984 | 98.1481 | 75.9754 | 556 | 55 | 689 | 13 | 12 | 92.3077 | |
| gduggal-snapvard | INDEL | C1_5 | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 48.7654 | 95.6463 | 0 | 0 | 79 | 83 | 9 | 10.8434 | |
| gduggal-snapvard | INDEL | C1_5 | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 41.0072 | 95.7686 | 0 | 0 | 57 | 82 | 9 | 10.9756 | |
| gduggal-snapvard | INDEL | C1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C1_5 | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 95.6522 | 94.7248 | 0 | 0 | 22 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l100_m2_e0 | * | 7.9208 | 4.4444 | 36.3636 | 95.3586 | 4 | 86 | 4 | 7 | 2 | 28.5714 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l100_m2_e0 | het | 13.5593 | 8.3333 | 36.3636 | 95.1754 | 4 | 44 | 4 | 7 | 2 | 28.5714 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 26 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 16 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | I6_15 | map_l100_m2_e0 | * | 53.4759 | 49.1379 | 58.6538 | 81.9130 | 57 | 59 | 61 | 43 | 25 | 58.1395 | |
| anovak-vg | INDEL | I6_15 | map_l100_m2_e0 | het | 44.6377 | 34.4262 | 63.4615 | 83.5962 | 21 | 40 | 33 | 19 | 5 | 26.3158 | |
| anovak-vg | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 0.0000 | 45.4545 | 0.0000 | 0.0000 | 10 | 12 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I6_15 | map_l100_m2_e0 | homalt | 63.9719 | 78.7879 | 53.8462 | 79.8450 | 26 | 7 | 28 | 24 | 20 | 83.3333 | |
| anovak-vg | SNP | tv | map_l100_m2_e0 | * | 83.6288 | 89.4260 | 78.5375 | 71.8835 | 22386 | 2647 | 22351 | 6108 | 1319 | 21.5946 | |
| anovak-vg | SNP | tv | map_l100_m2_e0 | het | 80.0810 | 92.3877 | 70.6676 | 74.1753 | 14576 | 1201 | 14566 | 6046 | 1273 | 21.0552 | |
| anovak-vg | SNP | tv | map_l100_m2_e0 | hetalt | 0.0000 | 30.9524 | 0.0000 | 0.0000 | 13 | 29 | 0 | 0 | 0 | ||
| anovak-vg | SNP | tv | map_l100_m2_e0 | homalt | 91.3367 | 84.6212 | 99.2099 | 63.3369 | 7797 | 1417 | 7785 | 62 | 46 | 74.1935 | |
| astatham-gatk | INDEL | * | map_l100_m2_e0 | * | 96.5801 | 95.1530 | 98.0507 | 86.7138 | 3514 | 179 | 3521 | 70 | 18 | 25.7143 | |
| astatham-gatk | INDEL | * | map_l100_m2_e0 | het | 95.1270 | 93.0212 | 97.3303 | 87.5556 | 2146 | 161 | 2151 | 59 | 12 | 20.3390 | |
| astatham-gatk | INDEL | * | map_l100_m2_e0 | hetalt | 95.3975 | 91.2000 | 100.0000 | 87.4865 | 114 | 11 | 116 | 0 | 0 | ||
| astatham-gatk | INDEL | * | map_l100_m2_e0 | homalt | 99.2874 | 99.4449 | 99.1304 | 84.8358 | 1254 | 7 | 1254 | 11 | 6 | 54.5455 | |
| astatham-gatk | INDEL | C16_PLUS | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C16_PLUS | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C16_PLUS | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C16_PLUS | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C1_5 | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C1_5 | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C1_5 | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| anovak-vg | SNP | ti | map_l100_m2_e0 | * | 84.5385 | 88.5991 | 80.8339 | 70.4808 | 43379 | 5582 | 43002 | 10196 | 2298 | 22.5383 | |
| anovak-vg | SNP | ti | map_l100_m2_e0 | het | 80.8461 | 90.4056 | 73.1149 | 73.2980 | 27684 | 2938 | 27470 | 10101 | 2208 | 21.8592 | |
| anovak-vg | SNP | ti | map_l100_m2_e0 | hetalt | 0.0000 | 36.6667 | 0.0000 | 0.0000 | 11 | 19 | 0 | 0 | 0 | ||
| anovak-vg | SNP | ti | map_l100_m2_e0 | homalt | 92.0181 | 85.6628 | 99.3921 | 60.4480 | 15684 | 2625 | 15532 | 95 | 90 | 94.7368 | |
| anovak-vg | INDEL | I1_5 | map_l100_m2_e0 | * | 58.1587 | 59.3567 | 57.0081 | 84.8215 | 812 | 556 | 846 | 638 | 455 | 71.3166 | |
| anovak-vg | INDEL | I1_5 | map_l100_m2_e0 | het | 48.1704 | 38.4615 | 64.4359 | 89.9093 | 305 | 488 | 337 | 186 | 31 | 16.6667 | |
| anovak-vg | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 34.0909 | 0.0000 | 0.0000 | 15 | 29 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I1_5 | map_l100_m2_e0 | homalt | 67.4017 | 92.6554 | 52.9657 | 79.0814 | 492 | 39 | 509 | 452 | 424 | 93.8053 | |