PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
30201-30250 / 86044 show all | |||||||||||||||
| ghariani-varprowl | INDEL | * | map_l100_m2_e0 | homalt | 94.8057 | 91.9112 | 97.8885 | 80.1409 | 1159 | 102 | 1159 | 25 | 8 | 32.0000 | |
| gduggal-snapvard | INDEL | I6_15 | map_l100_m2_e0 | * | 60.8455 | 60.3448 | 61.3546 | 79.4431 | 70 | 46 | 154 | 97 | 79 | 81.4433 | |
| gduggal-snapvard | INDEL | I6_15 | map_l100_m2_e0 | het | 69.9557 | 88.5246 | 57.8261 | 79.7357 | 54 | 7 | 133 | 97 | 79 | 81.4433 | |
| gduggal-snapvard | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 0.0000 | 31.8182 | 0.0000 | 0.0000 | 7 | 15 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | map_l100_m2_e0 | homalt | 42.8571 | 27.2727 | 100.0000 | 75.5814 | 9 | 24 | 21 | 0 | 0 | ||
| gduggal-snapvard | SNP | * | map_l100_m2_e0 | * | 95.0024 | 96.5659 | 93.4887 | 74.9387 | 71424 | 2540 | 70426 | 4905 | 414 | 8.4404 | |
| gduggal-snapvard | SNP | * | map_l100_m2_e0 | het | 93.3360 | 96.7693 | 90.1379 | 78.6381 | 44900 | 1499 | 44319 | 4849 | 371 | 7.6511 | |
| gduggal-snapvard | SNP | * | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 42 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | tv | map_l100_m2_e0 | * | 94.5205 | 97.0079 | 92.1574 | 76.1726 | 24284 | 749 | 24195 | 2059 | 151 | 7.3337 | |
| gduggal-snapvard | SNP | tv | map_l100_m2_e0 | het | 92.6002 | 97.4203 | 88.2346 | 79.7371 | 15370 | 407 | 15314 | 2042 | 140 | 6.8560 | |
| gduggal-snapvard | SNP | tv | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 42 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | tv | map_l100_m2_e0 | homalt | 98.2526 | 96.7441 | 99.8089 | 63.7260 | 8914 | 300 | 8881 | 17 | 11 | 64.7059 | |
| gduggal-snapplat | INDEL | * | map_l100_m2_e0 | * | 80.0736 | 72.4343 | 89.5141 | 91.6820 | 2675 | 1018 | 2911 | 341 | 39 | 11.4370 | |
| gduggal-snapplat | INDEL | * | map_l100_m2_e0 | het | 79.5566 | 73.6888 | 86.4399 | 92.5370 | 1700 | 607 | 1855 | 291 | 32 | 10.9966 | |
| gduggal-snapplat | INDEL | * | map_l100_m2_e0 | hetalt | 22.4330 | 13.6000 | 64.0000 | 98.2970 | 17 | 108 | 16 | 9 | 5 | 55.5556 | |
| gduggal-snapplat | INDEL | * | map_l100_m2_e0 | homalt | 84.9002 | 75.9715 | 96.2072 | 87.8170 | 958 | 303 | 1040 | 41 | 2 | 4.8781 | |
| gduggal-snapplat | INDEL | D16_PLUS | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 90 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D16_PLUS | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 48 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 26 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 16 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D1_5 | map_l100_m2_e0 | * | 85.5517 | 80.3655 | 91.4534 | 91.1012 | 1539 | 376 | 1787 | 167 | 33 | 19.7605 | |
| gduggal-snapplat | INDEL | D1_5 | map_l100_m2_e0 | het | 85.3180 | 81.8471 | 89.0963 | 91.8164 | 1028 | 228 | 1193 | 146 | 28 | 19.1781 | |
| gduggal-snapplat | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 32.8358 | 22.9167 | 57.8947 | 98.1500 | 11 | 37 | 11 | 8 | 4 | 50.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l100_m2_e0 | homalt | 89.1147 | 81.8331 | 97.8188 | 86.9556 | 500 | 111 | 583 | 13 | 1 | 7.6923 | |
| gduggal-snapplat | INDEL | D6_15 | map_l100_m2_e0 | * | 38.8774 | 25.3788 | 83.0508 | 94.3378 | 67 | 197 | 49 | 10 | 1 | 10.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l100_m2_e0 | het | 44.0534 | 31.2977 | 74.3590 | 93.8389 | 41 | 90 | 29 | 10 | 1 | 10.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 16.2162 | 8.8235 | 100.0000 | 96.8750 | 6 | 62 | 6 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l100_m2_e0 | homalt | 47.0588 | 30.7692 | 100.0000 | 93.5484 | 20 | 45 | 14 | 0 | 0 | ||
| gduggal-snapplat | INDEL | C1_5 | map_l100_m2_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | C1_5 | map_l100_m2_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | C1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C1_5 | map_l100_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | C6_15 | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C6_15 | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C6_15 | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C6_15 | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | SNP | tv | map_l100_m2_e0 | * | 97.5647 | 98.0226 | 97.1111 | 71.6649 | 24538 | 495 | 24539 | 730 | 232 | 31.7808 | |
| gduggal-snapfb | SNP | tv | map_l100_m2_e0 | het | 97.1053 | 98.4471 | 95.7997 | 70.6844 | 15532 | 245 | 15532 | 681 | 223 | 32.7460 | |
| gduggal-snapfb | SNP | tv | map_l100_m2_e0 | hetalt | 94.1176 | 95.2381 | 93.0233 | 86.3924 | 40 | 2 | 40 | 3 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | map_l100_m2_e0 | homalt | 98.3869 | 97.3084 | 99.4896 | 73.1420 | 8966 | 248 | 8967 | 46 | 9 | 19.5652 | |
| gduggal-snapplat | INDEL | C16_PLUS | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C16_PLUS | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C16_PLUS | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C16_PLUS | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C6_15 | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 30.0000 | 97.2452 | 0 | 0 | 3 | 7 | 1 | 14.2857 | |
| gduggal-snapvard | INDEL | C6_15 | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 22.2222 | 97.1875 | 0 | 0 | 2 | 7 | 1 | 14.2857 | |
| gduggal-snapvard | INDEL | C6_15 | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C6_15 | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 97.6744 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | map_l100_m2_e0 | * | 66.9120 | 61.7424 | 73.0263 | 82.9213 | 163 | 101 | 222 | 82 | 58 | 70.7317 | |
| gduggal-snapvard | INDEL | D6_15 | map_l100_m2_e0 | het | 76.5318 | 83.2061 | 70.8487 | 83.4554 | 109 | 22 | 192 | 79 | 55 | 69.6203 | |