PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
30001-30050 / 86044 show all | |||||||||||||||
| ghariani-varprowl | INDEL | C16_PLUS | map_l100_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C16_PLUS | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C16_PLUS | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | C16_PLUS | map_l100_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I6_15 | map_l100_m2_e1 | * | 60.9208 | 60.3448 | 61.5079 | 79.7590 | 70 | 46 | 155 | 97 | 79 | 81.4433 | |
| gduggal-snapvard | INDEL | I6_15 | map_l100_m2_e1 | het | 70.0891 | 88.5246 | 58.0087 | 80.0690 | 54 | 7 | 134 | 97 | 79 | 81.4433 | |
| gduggal-snapvard | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 0.0000 | 31.8182 | 0.0000 | 0.0000 | 7 | 15 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | map_l100_m2_e1 | homalt | 42.8571 | 27.2727 | 100.0000 | 75.5814 | 9 | 24 | 21 | 0 | 0 | ||
| gduggal-snapvard | SNP | tv | map_l100_m2_e1 | * | 94.5392 | 97.0059 | 92.1948 | 76.2078 | 24526 | 757 | 24427 | 2068 | 154 | 7.4468 | |
| gduggal-snapvard | SNP | tv | map_l100_m2_e1 | het | 92.6451 | 97.4464 | 88.2947 | 79.7695 | 15531 | 407 | 15471 | 2051 | 143 | 6.9722 | |
| gduggal-snapvard | SNP | tv | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 43 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | tv | map_l100_m2_e1 | homalt | 98.2305 | 96.6996 | 99.8105 | 63.7425 | 8995 | 307 | 8956 | 17 | 11 | 64.7059 | |
| ghariani-varprowl | INDEL | * | map_l100_m2_e1 | * | 90.3178 | 92.5453 | 88.1950 | 92.4782 | 3476 | 280 | 3474 | 465 | 216 | 46.4516 | |
| ghariani-varprowl | INDEL | * | map_l100_m2_e1 | het | 90.4724 | 98.0794 | 83.9605 | 89.9843 | 2298 | 45 | 2298 | 439 | 207 | 47.1526 | |
| ghariani-varprowl | INDEL | * | map_l100_m2_e1 | hetalt | 0.0000 | 1.5152 | 0.0000 | 0.0000 | 2 | 130 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | * | map_l100_m2_e1 | homalt | 94.7241 | 91.8033 | 97.8369 | 80.2368 | 1176 | 105 | 1176 | 26 | 9 | 34.6154 | |
| gduggal-snapvard | SNP | * | map_l100_m2_e1 | * | 95.0240 | 96.5773 | 93.5198 | 74.9627 | 72179 | 2558 | 71162 | 4931 | 419 | 8.4973 | |
| gduggal-snapvard | SNP | * | map_l100_m2_e1 | het | 93.3754 | 96.7973 | 90.1872 | 78.6618 | 45396 | 1502 | 44805 | 4875 | 376 | 7.7128 | |
| gduggal-snapvard | SNP | * | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 43 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | * | map_l100_m2_e1 | homalt | 98.0418 | 96.3556 | 99.7880 | 62.8493 | 26783 | 1013 | 26357 | 56 | 43 | 76.7857 | |
| gduggal-snapvard | SNP | ti | map_l100_m2_e1 | * | 95.1804 | 96.2979 | 94.0886 | 74.3752 | 47653 | 1832 | 47192 | 2965 | 284 | 9.5784 | |
| gduggal-snapvard | SNP | ti | map_l100_m2_e1 | het | 93.6568 | 96.4632 | 91.0091 | 78.1383 | 29865 | 1095 | 29608 | 2925 | 251 | 8.5812 | |
| gduggal-snapvard | SNP | ti | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 31 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | ti | map_l100_m2_e1 | homalt | 97.9449 | 96.1825 | 99.7730 | 62.4406 | 17788 | 706 | 17584 | 40 | 33 | 82.5000 | |
| gduggal-snapplat | SNP | tv | map_l100_m2_e1 | * | 94.9238 | 93.3394 | 96.5629 | 79.3964 | 23599 | 1684 | 23599 | 840 | 407 | 48.4524 | |
| gduggal-snapplat | SNP | tv | map_l100_m2_e1 | het | 94.7477 | 94.6794 | 94.8162 | 82.9388 | 15090 | 848 | 15090 | 825 | 397 | 48.1212 | |
| gduggal-snapplat | SNP | tv | map_l100_m2_e1 | hetalt | 85.3933 | 88.3721 | 82.6087 | 84.8684 | 38 | 5 | 38 | 8 | 8 | 100.0000 | |
| gduggal-snapplat | SNP | tv | map_l100_m2_e1 | homalt | 95.2868 | 91.0664 | 99.9174 | 66.1273 | 8471 | 831 | 8471 | 7 | 2 | 28.5714 | |
| gduggal-snapvard | INDEL | * | map_l100_m2_e1 | * | 85.8099 | 88.8445 | 82.9757 | 86.6598 | 3337 | 419 | 4601 | 944 | 443 | 46.9280 | |
| gduggal-snapvard | INDEL | * | map_l100_m2_e1 | het | 84.8243 | 94.1101 | 77.2064 | 88.4817 | 2205 | 138 | 3123 | 922 | 425 | 46.0954 | |
| gduggal-snapvard | INDEL | * | map_l100_m2_e1 | hetalt | 0.0000 | 34.0909 | 0.0000 | 0.0000 | 45 | 87 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | map_l100_m2_e1 | homalt | 91.1844 | 84.8556 | 98.5333 | 76.7370 | 1087 | 194 | 1478 | 22 | 18 | 81.8182 | |
| gduggal-snapvard | INDEL | C16_PLUS | map_l100_m2_e1 | * | 0.0000 | 0.0000 | 100.0000 | 96.2963 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C16_PLUS | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 100.0000 | 96.0000 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C16_PLUS | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C16_PLUS | map_l100_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | ti | map_l100_m2_e1 | * | 95.8022 | 94.4145 | 97.2313 | 76.1409 | 46721 | 2764 | 46742 | 1331 | 691 | 51.9159 | |
| gduggal-snapplat | SNP | ti | map_l100_m2_e1 | het | 95.5522 | 95.3521 | 95.7532 | 80.1277 | 29521 | 1439 | 29559 | 1311 | 671 | 51.1823 | |
| gduggal-snapplat | SNP | ti | map_l100_m2_e1 | hetalt | 86.5672 | 93.5484 | 80.5556 | 81.3472 | 29 | 2 | 29 | 7 | 7 | 100.0000 | |
| gduggal-snapplat | SNP | ti | map_l100_m2_e1 | homalt | 96.2554 | 92.8463 | 99.9243 | 62.6415 | 17171 | 1323 | 17154 | 13 | 13 | 100.0000 | |
| gduggal-snapplat | INDEL | I16_PLUS | map_l100_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 26 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I16_PLUS | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 18 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I16_PLUS | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 5 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I6_15 | map_l100_m2_e1 | * | 17.1429 | 10.3448 | 50.0000 | 95.0339 | 12 | 104 | 11 | 11 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l100_m2_e1 | het | 17.8344 | 11.4754 | 40.0000 | 94.2748 | 7 | 54 | 6 | 9 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 22 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | I6_15 | map_l100_m2_e1 | homalt | 25.0000 | 15.1515 | 71.4286 | 93.9130 | 5 | 28 | 5 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | * | map_l100_m2_e1 | * | 95.5097 | 94.0511 | 97.0142 | 77.3448 | 70291 | 4446 | 70312 | 2164 | 1091 | 50.4159 | |
| gduggal-snapplat | SNP | * | map_l100_m2_e1 | het | 95.2787 | 95.1235 | 95.4344 | 81.1824 | 44611 | 2287 | 44649 | 2136 | 1068 | 50.0000 | |