PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
29901-29950 / 86044 show all | |||||||||||||||
| ghariani-varprowl | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 22 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I6_15 | map_l100_m2_e1 | homalt | 82.7586 | 72.7273 | 96.0000 | 81.4815 | 24 | 9 | 24 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | SNP | * | map_l100_m2_e1 | * | 98.3564 | 99.0460 | 97.6764 | 72.0101 | 74024 | 713 | 74027 | 1761 | 324 | 18.3986 | |
| ghariani-varprowl | SNP | * | map_l100_m2_e1 | het | 97.8415 | 99.1599 | 96.5577 | 75.0527 | 46504 | 394 | 46507 | 1658 | 256 | 15.4403 | |
| ghariani-varprowl | SNP | * | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 43 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | * | map_l100_m2_e1 | homalt | 99.3161 | 99.0071 | 99.6271 | 64.4501 | 27520 | 276 | 27520 | 103 | 68 | 66.0194 | |
| ghariani-varprowl | SNP | ti | map_l100_m2_e1 | * | 98.6004 | 99.0118 | 98.1924 | 70.8832 | 48996 | 489 | 48998 | 902 | 186 | 20.6208 | |
| ghariani-varprowl | SNP | ti | map_l100_m2_e1 | het | 98.1632 | 99.0762 | 97.2668 | 74.0488 | 30674 | 286 | 30676 | 862 | 158 | 18.3295 | |
| ghariani-varprowl | SNP | ti | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 31 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | ti | map_l100_m2_e1 | homalt | 99.4248 | 99.0700 | 99.7822 | 63.1662 | 18322 | 172 | 18322 | 40 | 28 | 70.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m2_e1 | * | 93.7587 | 94.2652 | 93.2576 | 87.8356 | 1315 | 80 | 1314 | 95 | 35 | 36.8421 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m2_e1 | het | 94.1953 | 98.2716 | 90.4437 | 90.5024 | 796 | 14 | 795 | 84 | 29 | 34.5238 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 45 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I1_5 | map_l100_m2_e1 | homalt | 97.0093 | 96.1111 | 97.9245 | 77.2337 | 519 | 21 | 519 | 11 | 6 | 54.5455 | |
| ghariani-varprowl | INDEL | I6_15 | map_l100_m2_e1 | * | 72.3005 | 66.3793 | 79.3814 | 89.1134 | 77 | 39 | 77 | 20 | 16 | 80.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l100_m2_e1 | het | 79.6992 | 86.8852 | 73.6111 | 90.4762 | 53 | 8 | 53 | 19 | 15 | 78.9474 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l100_m2_e1 | * | 60.4431 | 58.7629 | 62.2222 | 95.9441 | 57 | 40 | 56 | 34 | 24 | 70.5882 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l100_m2_e1 | het | 71.2121 | 92.1569 | 58.0247 | 95.0670 | 47 | 4 | 47 | 34 | 24 | 70.5882 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 0.0000 | 3.3333 | 0.0000 | 0.0000 | 1 | 29 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 72.0000 | 56.2500 | 100.0000 | 98.4402 | 9 | 7 | 9 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | map_l100_m2_e1 | * | 67.6145 | 65.4545 | 69.9219 | 89.0552 | 180 | 95 | 179 | 77 | 71 | 92.2078 | |
| ghariani-varprowl | INDEL | D6_15 | map_l100_m2_e1 | het | 76.7442 | 97.7778 | 63.1579 | 89.8936 | 132 | 3 | 132 | 77 | 71 | 92.2078 | |
| ghariani-varprowl | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 0.0000 | 1.3699 | 0.0000 | 0.0000 | 1 | 72 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | map_l100_m2_e1 | homalt | 82.4561 | 70.1493 | 100.0000 | 82.6568 | 47 | 20 | 47 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I16_PLUS | map_l100_m2_e1 | * | 66.6667 | 61.5385 | 72.7273 | 86.9048 | 16 | 10 | 16 | 6 | 4 | 66.6667 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l100_m2_e1 | het | 76.9231 | 83.3333 | 71.4286 | 86.0927 | 15 | 3 | 15 | 6 | 4 | 66.6667 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 33.3333 | 20.0000 | 100.0000 | 94.1176 | 1 | 4 | 1 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | map_l100_m2_e1 | * | 91.5085 | 94.4817 | 88.7167 | 87.2602 | 1832 | 107 | 1832 | 233 | 66 | 28.3262 | |
| ghariani-varprowl | INDEL | D1_5 | map_l100_m2_e1 | het | 91.5448 | 98.9748 | 85.1525 | 89.0375 | 1255 | 13 | 1256 | 219 | 64 | 29.2237 | |
| ghariani-varprowl | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 0.0000 | 1.9608 | 0.0000 | 0.0000 | 1 | 50 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | map_l100_m2_e1 | homalt | 95.2066 | 92.9032 | 97.6271 | 78.5766 | 576 | 44 | 576 | 14 | 2 | 14.2857 | |
| gduggal-snapplat | INDEL | D1_5 | map_l100_m2_e1 | * | 85.3151 | 80.0413 | 91.3330 | 91.1809 | 1552 | 387 | 1802 | 171 | 33 | 19.2982 | |
| gduggal-snapplat | INDEL | D1_5 | map_l100_m2_e1 | het | 85.1359 | 81.6246 | 88.9630 | 91.9002 | 1035 | 233 | 1201 | 149 | 28 | 18.7919 | |
| gduggal-snapplat | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 30.9859 | 21.5686 | 55.0000 | 98.0788 | 11 | 40 | 11 | 9 | 4 | 44.4444 | |
| gduggal-snapplat | INDEL | D1_5 | map_l100_m2_e1 | homalt | 88.9945 | 81.6129 | 97.8441 | 87.0712 | 506 | 114 | 590 | 13 | 1 | 7.6923 | |
| gduggal-snapplat | INDEL | D6_15 | map_l100_m2_e1 | * | 37.6750 | 24.3636 | 83.0508 | 94.4076 | 67 | 208 | 49 | 10 | 1 | 10.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l100_m2_e1 | het | 43.1266 | 30.3704 | 74.3590 | 93.8967 | 41 | 94 | 29 | 10 | 1 | 10.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 15.1899 | 8.2192 | 100.0000 | 96.9388 | 6 | 67 | 6 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l100_m2_e1 | homalt | 45.9770 | 29.8507 | 100.0000 | 93.6364 | 20 | 47 | 14 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D16_PLUS | map_l100_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 97 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D16_PLUS | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 51 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 30 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 16 | 0 | 0 | 0 | |||
| gduggal-snapfb | SNP | tv | map_l100_m2_e1 | * | 97.5848 | 98.0422 | 97.1318 | 71.7053 | 24788 | 495 | 24789 | 732 | 232 | 31.6940 | |
| gduggal-snapfb | SNP | tv | map_l100_m2_e1 | het | 97.1282 | 98.4628 | 95.8293 | 70.7561 | 15693 | 245 | 15693 | 683 | 223 | 32.6501 | |
| gduggal-snapfb | SNP | tv | map_l100_m2_e1 | hetalt | 94.2529 | 95.3488 | 93.1818 | 86.1635 | 41 | 2 | 41 | 3 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | map_l100_m2_e1 | homalt | 98.4024 | 97.3339 | 99.4946 | 73.1383 | 9054 | 248 | 9055 | 46 | 9 | 19.5652 | |
| gduggal-snapplat | INDEL | C16_PLUS | map_l100_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C16_PLUS | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||