PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubset GenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
29851-29900 / 86044 show all
hfeng-pmm1INDELD6_15map_l100_m2_e1hetalt
94.9640
90.4110
100.0000
74.9049
6676600
hfeng-pmm1INDELD6_15map_l100_m2_e1homalt
98.4848
97.0149
100.0000
83.9901
6526500
hfeng-pmm1INDELC6_15map_l100_m2_e1*
0.0000
0.0000
0.0000
00000
hfeng-pmm1INDELC6_15map_l100_m2_e1het
0.0000
0.0000
0.0000
00000
hfeng-pmm1INDELC6_15map_l100_m2_e1hetalt
0.0000
0.0000
0.0000
00000
hfeng-pmm1INDELC6_15map_l100_m2_e1homalt
0.0000
0.0000
0.0000
00000
ghariani-varprowlSNPtvmap_l100_m2_e1*
97.8230
98.9914
96.6819
73.9531
2502825525029859138
16.0652
ghariani-varprowlSNPtvmap_l100_m2_e1het
97.2241
99.3224
95.2126
76.7581
158301081583179698
12.3116
ghariani-varprowlSNPtvmap_l100_m2_e1hetalt
0.0000
0.0000
0.0000
043000
ghariani-varprowlSNPtvmap_l100_m2_e1homalt
99.1004
98.8820
99.3197
66.7481
919810491986340
63.4921
hfeng-pmm1INDELC16_PLUSmap_l100_m2_e1*
0.0000
0.0000
0.0000
00000
hfeng-pmm1INDELC16_PLUSmap_l100_m2_e1het
0.0000
0.0000
0.0000
00000
hfeng-pmm1INDELC16_PLUSmap_l100_m2_e1hetalt
0.0000
0.0000
0.0000
00000
hfeng-pmm1INDELC16_PLUSmap_l100_m2_e1homalt
0.0000
0.0000
0.0000
00000
hfeng-pmm1INDELC1_5map_l100_m2_e1*
0.0000
0.0000
0.0000
00000
hfeng-pmm1INDELC1_5map_l100_m2_e1het
0.0000
0.0000
0.0000
00000
hfeng-pmm1INDELC1_5map_l100_m2_e1hetalt
0.0000
0.0000
0.0000
00000
hfeng-pmm1INDELC1_5map_l100_m2_e1homalt
0.0000
0.0000
0.0000
00000
hfeng-pmm1INDEL*map_l100_m2_e1*
98.1906
97.4707
98.9213
83.6789
3661953668409
22.5000
hfeng-pmm1INDEL*map_l100_m2_e1het
97.8030
96.8417
98.7837
83.8513
2269742274284
14.2857
hfeng-pmm1INDEL*map_l100_m2_e1hetalt
94.8207
90.1515
100.0000
87.7654
1191312100
hfeng-pmm1INDEL*map_l100_m2_e1homalt
99.2206
99.3755
99.0661
82.8094
127381273125
41.6667
hfeng-pmm1SNPtvmap_l100_m2_e1*
99.6118
99.4660
99.7580
65.8552
25148135251446117
27.8689
hfeng-pmm1SNPtvmap_l100_m2_e1het
99.4686
99.2408
99.6974
66.3712
15817121158134812
25.0000
hfeng-pmm1SNPtvmap_l100_m2_e1hetalt
100.0000
100.0000
100.0000
78.2828
4304300
hfeng-pmm1SNPtvmap_l100_m2_e1homalt
99.8549
99.8495
99.8602
64.8422
9288149288135
38.4615
hfeng-pmm2INDEL*map_l100_m2_e1*
98.3131
98.4292
98.1972
85.3384
36975937046813
19.1176
hfeng-pmm2INDEL*map_l100_m2_e1het
98.0684
98.4635
97.6764
86.2047
2307362312557
12.7273
hfeng-pmm2INDEL*map_l100_m2_e1hetalt
93.9759
88.6364
100.0000
88.0522
1171511900
hfeng-pmm2INDEL*map_l100_m2_e1homalt
99.1819
99.3755
98.9891
83.0186
127381273136
46.1538
hfeng-pmm1SNPtimap_l100_m2_e1*
99.5757
99.3634
99.7889
64.0077
491703154916310432
30.7692
hfeng-pmm1SNPtimap_l100_m2_e1het
99.4037
99.0762
99.7333
64.8020
30674286306678220
24.3902
hfeng-pmm1SNPtimap_l100_m2_e1hetalt
100.0000
100.0000
100.0000
75.0000
3103100
hfeng-pmm1SNPtimap_l100_m2_e1homalt
99.8621
99.8432
99.8810
62.5754
1846529184652212
54.5455
hfeng-pmm1INDELI16_PLUSmap_l100_m2_e1*
92.3077
92.3077
92.3077
95.5017
2422420
0.0000
hfeng-pmm1INDELI16_PLUSmap_l100_m2_e1het
94.4444
94.4444
94.4444
94.1558
1711710
0.0000
hfeng-pmm1INDELI16_PLUSmap_l100_m2_e1hetalt
80.0000
66.6667
100.0000
94.4444
21200
hfeng-pmm1INDELI16_PLUSmap_l100_m2_e1homalt
90.9091
100.0000
83.3333
97.4359
50510
0.0000
hfeng-pmm1INDELI6_15map_l100_m2_e1*
95.0673
91.3793
99.0654
87.0303
1061010611
100.0000
hfeng-pmm1INDELI6_15map_l100_m2_e1het
93.1034
88.5246
98.1818
87.2093
5475411
100.0000
hfeng-pmm1INDELI6_15map_l100_m2_e1hetalt
95.2381
90.9091
100.0000
84.7328
2022000
hfeng-pmm1INDELI6_15map_l100_m2_e1homalt
98.4615
96.9697
100.0000
87.8788
3213200
hfeng-pmm1SNP*map_l100_m2_e1*
99.5878
99.3979
99.7783
64.6489
742874507427616549
29.6970
hfeng-pmm1SNP*map_l100_m2_e1het
99.4258
99.1322
99.7211
65.3522
464914074648013032
24.6154
hfeng-pmm1SNP*map_l100_m2_e1hetalt
100.0000
100.0000
100.0000
78.2828
4304300
hfeng-pmm1SNP*map_l100_m2_e1homalt
99.8597
99.8453
99.8740
63.3660
2775343277533517
48.5714
hfeng-pmm1INDELI1_5map_l100_m2_e1*
98.7398
98.2079
99.2775
83.4529
1370251374104
40.0000
hfeng-pmm1INDELI1_5map_l100_m2_e1het
98.3148
97.1605
99.4969
84.1760
7872379140
0.0000
hfeng-pmm1INDELI1_5map_l100_m2_e1hetalt
97.7273
95.5556
100.0000
89.7375
4324300
hfeng-pmm1INDELI1_5map_l100_m2_e1homalt
99.4475
100.0000
98.9011
81.3078
540054064
66.6667