PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
29751-29800 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | * | map_l100_m2_e1 | hetalt | 94.4000 | 89.3939 | 100.0000 | 86.3481 | 118 | 14 | 120 | 0 | 0 | ||
| ckim-dragen | INDEL | * | map_l100_m2_e1 | homalt | 98.5552 | 98.5948 | 98.5156 | 84.6468 | 1263 | 18 | 1261 | 19 | 10 | 52.6316 | |
| ciseli-custom | SNP | ti | map_l100_m2_e1 | * | 86.3257 | 83.3424 | 89.5306 | 71.0284 | 41242 | 8243 | 41176 | 4815 | 1336 | 27.7466 | |
| ciseli-custom | SNP | ti | map_l100_m2_e1 | het | 83.3126 | 78.8921 | 88.2578 | 75.0429 | 24425 | 6535 | 24398 | 3246 | 86 | 2.6494 | |
| ciseli-custom | SNP | ti | map_l100_m2_e1 | hetalt | 75.8621 | 70.9677 | 81.4815 | 70.9677 | 22 | 9 | 22 | 5 | 5 | 100.0000 | |
| ciseli-custom | SNP | ti | map_l100_m2_e1 | homalt | 91.1369 | 90.8132 | 91.4629 | 61.7425 | 16795 | 1699 | 16756 | 1564 | 1245 | 79.6036 | |
| ciseli-custom | INDEL | D6_15 | map_l100_m2_e1 | * | 53.5373 | 50.9091 | 56.4516 | 88.7681 | 140 | 135 | 140 | 108 | 64 | 59.2593 | |
| ciseli-custom | INDEL | D6_15 | map_l100_m2_e1 | het | 63.0961 | 63.7037 | 62.5000 | 90.4573 | 86 | 49 | 90 | 54 | 13 | 24.0741 | |
| ciseli-custom | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 0.0000 | 4.1096 | 0.0000 | 0.0000 | 3 | 70 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | map_l100_m2_e1 | homalt | 58.9323 | 76.1194 | 48.0769 | 85.1216 | 51 | 16 | 50 | 54 | 51 | 94.4444 | |
| ciseli-custom | INDEL | I1_5 | map_l100_m2_e1 | * | 63.6010 | 58.1362 | 70.1998 | 85.9497 | 811 | 584 | 808 | 343 | 294 | 85.7143 | |
| ciseli-custom | INDEL | I1_5 | map_l100_m2_e1 | het | 69.5757 | 72.8395 | 66.5919 | 86.3900 | 590 | 220 | 594 | 298 | 258 | 86.5772 | |
| ciseli-custom | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 0.0000 | 11.1111 | 0.0000 | 0.0000 | 5 | 40 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I1_5 | map_l100_m2_e1 | homalt | 53.9043 | 40.0000 | 82.6255 | 84.1880 | 216 | 324 | 214 | 45 | 36 | 80.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l100_m2_e1 | * | 29.5302 | 18.9655 | 66.6667 | 90.0000 | 22 | 94 | 22 | 11 | 10 | 90.9091 | |
| ciseli-custom | INDEL | I6_15 | map_l100_m2_e1 | het | 37.0370 | 24.5902 | 75.0000 | 91.0314 | 15 | 46 | 15 | 5 | 5 | 100.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 22 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | I6_15 | map_l100_m2_e1 | homalt | 30.4348 | 21.2121 | 53.8462 | 87.8505 | 7 | 26 | 7 | 6 | 5 | 83.3333 | |
| ciseli-custom | SNP | * | map_l100_m2_e1 | * | 85.2411 | 82.0102 | 88.7370 | 71.8319 | 61292 | 13445 | 61099 | 7755 | 2048 | 26.4088 | |
| ciseli-custom | SNP | * | map_l100_m2_e1 | het | 81.9772 | 77.3999 | 87.1298 | 75.6982 | 36299 | 10599 | 36219 | 5350 | 161 | 3.0094 | |
| ciseli-custom | SNP | * | map_l100_m2_e1 | hetalt | 71.7949 | 65.1163 | 80.0000 | 75.6944 | 28 | 15 | 28 | 7 | 6 | 85.7143 | |
| ciseli-custom | SNP | * | map_l100_m2_e1 | homalt | 90.5022 | 89.8151 | 91.2000 | 62.7951 | 24965 | 2831 | 24852 | 2398 | 1881 | 78.4404 | |
| ciseli-custom | INDEL | I16_PLUS | map_l100_m2_e1 | * | 6.6667 | 3.8462 | 25.0000 | 97.1223 | 1 | 25 | 1 | 3 | 1 | 33.3333 | |
| ciseli-custom | INDEL | I16_PLUS | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 99.0196 | 0 | 18 | 0 | 1 | 0 | 0.0000 | ||
| ciseli-custom | INDEL | I16_PLUS | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 25.0000 | 20.0000 | 33.3333 | 91.8919 | 1 | 4 | 1 | 2 | 1 | 50.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_l100_m2_e1 | * | 88.8889 | 92.3077 | 85.7143 | 94.7955 | 24 | 2 | 24 | 4 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_l100_m2_e1 | het | 91.8919 | 94.4444 | 89.4737 | 94.7075 | 17 | 1 | 17 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_l100_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 93.9394 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 83.3333 | 100.0000 | 71.4286 | 95.2055 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l100_m2_e1 | * | 97.3023 | 96.9892 | 97.6173 | 85.4425 | 1353 | 42 | 1352 | 33 | 8 | 24.2424 | |
| ckim-dragen | INDEL | I1_5 | map_l100_m2_e1 | het | 96.2825 | 95.9259 | 96.6418 | 87.1729 | 777 | 33 | 777 | 27 | 3 | 11.1111 | |
| ckim-dragen | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 88.3657 | 42 | 3 | 42 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | map_l100_m2_e1 | homalt | 98.8879 | 98.8889 | 98.8868 | 81.3172 | 534 | 6 | 533 | 6 | 5 | 83.3333 | |
| ckim-dragen | INDEL | D1_5 | map_l100_m2_e1 | * | 97.6611 | 98.0402 | 97.2848 | 85.9143 | 1901 | 38 | 1899 | 53 | 6 | 11.3208 | |
| ckim-dragen | INDEL | D1_5 | map_l100_m2_e1 | het | 97.0706 | 98.1073 | 96.0557 | 86.5634 | 1244 | 24 | 1242 | 51 | 4 | 7.8431 | |
| ckim-dragen | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 93.7500 | 88.2353 | 100.0000 | 89.8901 | 45 | 6 | 46 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | map_l100_m2_e1 | homalt | 99.1894 | 98.7097 | 99.6737 | 83.7831 | 612 | 8 | 611 | 2 | 2 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l100_m2_e1 | * | 96.5009 | 95.2727 | 97.7612 | 88.6200 | 262 | 13 | 262 | 6 | 1 | 16.6667 | |
| ckim-dragen | INDEL | D6_15 | map_l100_m2_e1 | het | 97.0588 | 97.7778 | 96.3504 | 90.9631 | 132 | 3 | 132 | 5 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 94.9640 | 90.4110 | 100.0000 | 70.9251 | 66 | 7 | 66 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | map_l100_m2_e1 | homalt | 96.9697 | 95.5224 | 98.4615 | 89.3791 | 64 | 3 | 64 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | C16_PLUS | map_l100_m2_e1 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | C16_PLUS | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C16_PLUS | map_l100_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | C16_PLUS | map_l100_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C6_15 | map_l100_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C6_15 | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C6_15 | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | INDEL | C6_15 | map_l100_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||