PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
29701-29750 / 86044 show all | |||||||||||||||
| ckim-dragen | SNP | ti | map_l100_m2_e1 | * | 98.6777 | 99.2968 | 98.0664 | 68.9837 | 49137 | 348 | 49145 | 969 | 108 | 11.1455 | |
| ckim-dragen | SNP | ti | map_l100_m2_e1 | het | 98.1227 | 99.2603 | 97.0108 | 73.2091 | 30731 | 229 | 30734 | 947 | 88 | 9.2925 | |
| ckim-dragen | SNP | ti | map_l100_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 77.3723 | 31 | 0 | 31 | 0 | 0 | ||
| ckim-dragen | SNP | ti | map_l100_m2_e1 | homalt | 99.6178 | 99.3565 | 99.8804 | 57.3860 | 18375 | 119 | 18380 | 22 | 20 | 90.9091 | |
| ckim-dragen | SNP | tv | map_l100_m2_e1 | * | 98.6522 | 99.2920 | 98.0206 | 71.3656 | 25104 | 179 | 25107 | 507 | 45 | 8.8757 | |
| ckim-dragen | SNP | tv | map_l100_m2_e1 | het | 98.0614 | 99.1655 | 96.9816 | 75.2723 | 15805 | 133 | 15808 | 492 | 32 | 6.5041 | |
| ckim-dragen | SNP | tv | map_l100_m2_e1 | hetalt | 98.8235 | 97.6744 | 100.0000 | 80.8219 | 42 | 1 | 42 | 0 | 0 | ||
| ckim-dragen | SNP | tv | map_l100_m2_e1 | homalt | 99.6770 | 99.5162 | 99.8382 | 60.2316 | 9257 | 45 | 9257 | 15 | 13 | 86.6667 | |
| ckim-dragen | SNP | * | map_l100_m2_e1 | * | 98.6686 | 99.2949 | 98.0501 | 69.8284 | 74210 | 527 | 74221 | 1476 | 153 | 10.3659 | |
| ckim-dragen | SNP | * | map_l100_m2_e1 | het | 98.1019 | 99.2281 | 97.0009 | 73.9476 | 46536 | 362 | 46542 | 1439 | 120 | 8.3391 | |
| ckim-dragen | SNP | * | map_l100_m2_e1 | hetalt | 98.8235 | 97.6744 | 100.0000 | 80.8219 | 42 | 1 | 42 | 0 | 0 | ||
| ckim-dragen | SNP | * | map_l100_m2_e1 | homalt | 99.6376 | 99.4100 | 99.8663 | 58.3837 | 27632 | 164 | 27637 | 37 | 33 | 89.1892 | |
| cchapple-custom | INDEL | I6_15 | map_l100_m2_e1 | * | 92.9336 | 92.2414 | 93.6364 | 88.3103 | 107 | 9 | 103 | 7 | 2 | 28.5714 | |
| cchapple-custom | INDEL | I6_15 | map_l100_m2_e1 | het | 91.1744 | 90.1639 | 92.2078 | 88.8081 | 55 | 6 | 71 | 6 | 1 | 16.6667 | |
| cchapple-custom | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 0.0000 | 90.9091 | 0.0000 | 0.0000 | 20 | 2 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | map_l100_m2_e1 | homalt | 96.9697 | 96.9697 | 96.9697 | 86.9565 | 32 | 1 | 32 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | * | map_l100_m2_e1 | * | 97.5551 | 97.7575 | 97.3536 | 69.9828 | 73061 | 1676 | 73060 | 1986 | 410 | 20.6445 | |
| cchapple-custom | SNP | * | map_l100_m2_e1 | het | 96.8714 | 97.9018 | 95.8624 | 74.0033 | 45914 | 984 | 45967 | 1984 | 408 | 20.5645 | |
| cchapple-custom | SNP | * | map_l100_m2_e1 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 43 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | * | map_l100_m2_e1 | homalt | 98.7359 | 97.5104 | 99.9926 | 58.6714 | 27104 | 692 | 27093 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l100_m2_e1 | * | 97.3625 | 97.0609 | 97.6659 | 83.8268 | 1354 | 41 | 1339 | 32 | 10 | 31.2500 | |
| cchapple-custom | INDEL | I1_5 | map_l100_m2_e1 | het | 96.6133 | 96.6667 | 96.5599 | 85.3595 | 783 | 27 | 814 | 29 | 8 | 27.5862 | |
| cchapple-custom | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 0.0000 | 91.1111 | 0.0000 | 0.0000 | 41 | 4 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | map_l100_m2_e1 | homalt | 98.7858 | 98.1481 | 99.4318 | 80.5811 | 530 | 10 | 525 | 3 | 2 | 66.6667 | |
| cchapple-custom | INDEL | C6_15 | map_l100_m2_e1 | * | 0.0000 | 0.0000 | 50.0000 | 95.2663 | 0 | 0 | 4 | 4 | 1 | 25.0000 | |
| cchapple-custom | INDEL | C6_15 | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 42.8571 | 94.5736 | 0 | 0 | 3 | 4 | 1 | 25.0000 | |
| cchapple-custom | INDEL | C6_15 | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | C6_15 | map_l100_m2_e1 | homalt | 0.0000 | 0.0000 | 100.0000 | 97.5000 | 0 | 0 | 1 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | map_l100_m2_e1 | * | 91.9654 | 90.5455 | 93.4307 | 84.2075 | 249 | 26 | 256 | 18 | 11 | 61.1111 | |
| cchapple-custom | INDEL | D6_15 | map_l100_m2_e1 | het | 93.4443 | 94.0741 | 92.8230 | 84.6999 | 127 | 8 | 194 | 15 | 8 | 53.3333 | |
| cchapple-custom | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 0.0000 | 80.8219 | 0.0000 | 0.0000 | 59 | 14 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | map_l100_m2_e1 | homalt | 94.7024 | 94.0299 | 95.3846 | 82.3848 | 63 | 4 | 62 | 3 | 3 | 100.0000 | |
| cchapple-custom | INDEL | I16_PLUS | map_l100_m2_e1 | * | 91.1641 | 96.1538 | 86.6667 | 94.8718 | 25 | 1 | 26 | 4 | 1 | 25.0000 | |
| cchapple-custom | INDEL | I16_PLUS | map_l100_m2_e1 | het | 90.8397 | 94.4444 | 87.5000 | 94.0299 | 17 | 1 | 21 | 3 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I16_PLUS | map_l100_m2_e1 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 3 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 90.9091 | 100.0000 | 83.3333 | 96.7213 | 5 | 0 | 5 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l100_m2_e1 | * | 79.6787 | 78.3505 | 81.0526 | 92.1811 | 76 | 21 | 77 | 18 | 9 | 50.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l100_m2_e1 | het | 84.6663 | 86.2745 | 83.1169 | 92.2457 | 44 | 7 | 64 | 13 | 7 | 53.8462 | |
| cchapple-custom | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 0.0000 | 63.3333 | 0.0000 | 0.0000 | 19 | 11 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 76.4706 | 81.2500 | 72.2222 | 91.8919 | 13 | 3 | 13 | 5 | 2 | 40.0000 | |
| cchapple-custom | INDEL | D1_5 | map_l100_m2_e1 | * | 96.8194 | 97.3698 | 96.2752 | 82.6901 | 1888 | 51 | 1861 | 72 | 9 | 12.5000 | |
| cchapple-custom | INDEL | D1_5 | map_l100_m2_e1 | het | 96.1254 | 97.5552 | 94.7368 | 83.5172 | 1237 | 31 | 1260 | 70 | 7 | 10.0000 | |
| cchapple-custom | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 0.0000 | 88.2353 | 0.0000 | 0.0000 | 45 | 6 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | map_l100_m2_e1 | homalt | 98.6957 | 97.7419 | 99.6683 | 80.5358 | 606 | 14 | 601 | 2 | 2 | 100.0000 | |
| ciseli-custom | SNP | tv | map_l100_m2_e1 | * | 83.0739 | 79.3893 | 87.1172 | 73.4544 | 20072 | 5211 | 20057 | 2966 | 720 | 24.2751 | |
| ciseli-custom | SNP | tv | map_l100_m2_e1 | het | 79.3676 | 74.5012 | 84.9142 | 77.0349 | 11874 | 4064 | 11871 | 2109 | 75 | 3.5562 | |
| ciseli-custom | SNP | tv | map_l100_m2_e1 | hetalt | 71.7949 | 65.1163 | 80.0000 | 75.6944 | 28 | 15 | 28 | 7 | 6 | 85.7143 | |
| ciseli-custom | SNP | tv | map_l100_m2_e1 | homalt | 89.1763 | 87.8306 | 90.5639 | 64.9644 | 8170 | 1132 | 8158 | 850 | 639 | 75.1765 | |
| ckim-dragen | INDEL | * | map_l100_m2_e1 | * | 97.0145 | 97.3908 | 96.6411 | 87.1665 | 3658 | 98 | 3654 | 127 | 20 | 15.7480 | |
| ckim-dragen | INDEL | * | map_l100_m2_e1 | het | 96.3159 | 97.1831 | 95.4641 | 88.2397 | 2277 | 66 | 2273 | 108 | 10 | 9.2593 | |