PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 588 589 590 591 592 593 594 595 596 ... 1720 1721 » 29551-29600 / 86044 show all
hfeng-pmm3	INDEL	D1_5	map_l100_m2_e1	hetalt	94.8454	90.1961	100.0000	89.8925	46	5	47	0	0
hfeng-pmm3	INDEL	D1_5	map_l100_m2_e1	homalt	99.5958	99.3548	99.8379	80.6765	616	4	616	1	1	100.0000
jlack-gatk	INDEL	D16_PLUS	map_l100_m2_e1	*	84.4221	86.5979	82.3529	95.1126	84	13	84	18	6	33.3333
jlack-gatk	INDEL	D16_PLUS	map_l100_m2_e1	het	85.2524	92.1569	79.3103	96.2435	47	4	46	12	4	33.3333
jlack-gatk	INDEL	D16_PLUS	map_l100_m2_e1	hetalt	85.2510	76.6667	96.0000	77.0642	23	7	24	1	0	0.0000
jlack-gatk	INDEL	D16_PLUS	map_l100_m2_e1	homalt	80.0000	87.5000	73.6842	95.6221	14	2	14	5	2	40.0000
jlack-gatk	INDEL	D1_5	map_l100_m2_e1	*	95.2916	98.5044	92.2817	87.3451	1910	29	1913	160	11	6.8750
jlack-gatk	INDEL	D1_5	map_l100_m2_e1	het	93.6001	98.9748	88.7791	88.5873	1255	13	1258	159	10	6.2893
jlack-gatk	INDEL	D1_5	map_l100_m2_e1	hetalt	92.6316	86.2745	100.0000	91.1290	44	7	44	0	0
jlack-gatk	INDEL	D1_5	map_l100_m2_e1	homalt	99.1883	98.5484	99.8366	82.3580	611	9	611	1	1	100.0000
jlack-gatk	INDEL	D6_15	map_l100_m2_e1	*	92.3351	94.1818	90.5594	88.7090	259	16	259	27	5	18.5185
jlack-gatk	INDEL	D6_15	map_l100_m2_e1	het	89.5833	95.5556	84.3137	91.6485	129	6	129	24	3	12.5000
jlack-gatk	INDEL	D6_15	map_l100_m2_e1	hetalt	92.7536	87.6712	98.4615	72.9167	64	9	64	1	0	0.0000
jlack-gatk	INDEL	D6_15	map_l100_m2_e1	homalt	97.7778	98.5075	97.0588	85.2495	66	1	66	2	2	100.0000
jlack-gatk	INDEL	C6_15	map_l100_m2_e1	*		0.0000	0.0000	0.0000	0	0	0	0	0
jlack-gatk	INDEL	C6_15	map_l100_m2_e1	het		0.0000	0.0000	0.0000	0	0	0	0	0
jlack-gatk	INDEL	C6_15	map_l100_m2_e1	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
jlack-gatk	INDEL	C6_15	map_l100_m2_e1	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm3	SNP	tv	map_l100_m2_e1	*	99.6458	99.6045	99.6872	66.3290	25183	100	25179	79	10	12.6582
hfeng-pmm3	SNP	tv	map_l100_m2_e1	het	99.5354	99.4855	99.5854	67.1367	15856	82	15852	66	5	7.5758
hfeng-pmm3	SNP	tv	map_l100_m2_e1	hetalt	100.0000	100.0000	100.0000	78.1726	43	0	43	0	0
hfeng-pmm3	SNP	tv	map_l100_m2_e1	homalt	99.8333	99.8065	99.8602	64.7574	9284	18	9284	13	5	38.4615
jlack-gatk	INDEL	C16_PLUS	map_l100_m2_e1	*		0.0000	0.0000	0.0000	0	0	0	0	0
jlack-gatk	INDEL	C16_PLUS	map_l100_m2_e1	het		0.0000	0.0000	0.0000	0	0	0	0	0
jlack-gatk	INDEL	C16_PLUS	map_l100_m2_e1	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
jlack-gatk	INDEL	C16_PLUS	map_l100_m2_e1	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
jlack-gatk	INDEL	C1_5	map_l100_m2_e1	*		0.0000	0.0000	0.0000	0	0	0	0	0
jlack-gatk	INDEL	C1_5	map_l100_m2_e1	het		0.0000	0.0000	0.0000	0	0	0	0	0
jlack-gatk	INDEL	C1_5	map_l100_m2_e1	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
jlack-gatk	INDEL	C1_5	map_l100_m2_e1	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
jlack-gatk	INDEL	*	map_l100_m2_e1	*	95.3410	97.9233	92.8914	88.4293	3678	78	3685	282	30	10.6383
jlack-gatk	INDEL	*	map_l100_m2_e1	het	93.7377	98.1647	89.6927	89.8540	2300	43	2306	265	22	8.3019
jlack-gatk	INDEL	*	map_l100_m2_e1	hetalt	92.3109	86.3636	99.1379	88.0903	114	18	115	1	0	0.0000
jlack-gatk	INDEL	*	map_l100_m2_e1	homalt	98.7114	98.6729	98.7500	83.9418	1264	17	1264	16	8	50.0000
hfeng-pmm3	INDEL	C1_5	map_l100_m2_e1	*		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm3	INDEL	C1_5	map_l100_m2_e1	het		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm3	INDEL	C1_5	map_l100_m2_e1	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm3	INDEL	C1_5	map_l100_m2_e1	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm3	INDEL	C6_15	map_l100_m2_e1	*		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm3	INDEL	C6_15	map_l100_m2_e1	het		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm3	INDEL	C6_15	map_l100_m2_e1	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm3	INDEL	C6_15	map_l100_m2_e1	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm3	INDEL	C16_PLUS	map_l100_m2_e1	*		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm3	INDEL	C16_PLUS	map_l100_m2_e1	het		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm3	INDEL	C16_PLUS	map_l100_m2_e1	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm3	INDEL	C16_PLUS	map_l100_m2_e1	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
hfeng-pmm2	INDEL	I6_15	map_l100_m2_e1	*	96.0000	93.1034	99.0826	87.9956	108	8	108	1	1	100.0000
hfeng-pmm2	INDEL	I6_15	map_l100_m2_e1	het	94.9153	91.8033	98.2456	88.4146	56	5	56	1	1	100.0000
hfeng-pmm2	INDEL	I6_15	map_l100_m2_e1	hetalt	95.2381	90.9091	100.0000	85.1852	20	2	20	0	0
hfeng-pmm2	INDEL	I6_15	map_l100_m2_e1	homalt	98.4615	96.9697	100.0000	88.6121	32	1	32	0	0

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge