PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
29501-29550 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | INDEL | C16_PLUS | map_l100_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C16_PLUS | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C16_PLUS | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C16_PLUS | map_l100_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | D16_PLUS | map_l100_m2_e1 | * | 88.5572 | 91.7526 | 85.5769 | 93.7799 | 89 | 8 | 89 | 15 | 3 | 20.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l100_m2_e1 | het | 88.7476 | 96.0784 | 82.4561 | 95.1199 | 49 | 2 | 47 | 10 | 3 | 30.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 90.9091 | 83.3333 | 100.0000 | 78.5714 | 25 | 5 | 27 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 83.3333 | 93.7500 | 75.0000 | 94.7090 | 15 | 1 | 15 | 5 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l100_m2_e1 | * | 98.7423 | 99.0717 | 98.4151 | 83.8640 | 1921 | 18 | 1925 | 31 | 4 | 12.9032 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l100_m2_e1 | het | 98.4365 | 99.1325 | 97.7502 | 84.2651 | 1257 | 11 | 1260 | 29 | 2 | 6.8966 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 95.9184 | 92.1569 | 100.0000 | 90.8046 | 47 | 4 | 48 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | map_l100_m2_e1 | homalt | 99.5964 | 99.5161 | 99.6769 | 81.8369 | 617 | 3 | 617 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | C1_5 | map_l100_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C1_5 | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C1_5 | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C1_5 | map_l100_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C6_15 | map_l100_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C6_15 | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C6_15 | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | C6_15 | map_l100_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm3 | SNP | * | map_l100_m2_e1 | * | 99.6666 | 99.5946 | 99.7387 | 65.1913 | 74434 | 303 | 74423 | 195 | 31 | 15.8974 | |
| hfeng-pmm3 | SNP | * | map_l100_m2_e1 | het | 99.5538 | 99.4499 | 99.6580 | 66.2190 | 46640 | 258 | 46629 | 160 | 14 | 8.7500 | |
| hfeng-pmm3 | SNP | * | map_l100_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 78.1726 | 43 | 0 | 43 | 0 | 0 | ||
| hfeng-pmm3 | SNP | * | map_l100_m2_e1 | homalt | 99.8561 | 99.8381 | 99.8740 | 63.2761 | 27751 | 45 | 27751 | 35 | 17 | 48.5714 | |
| hfeng-pmm3 | SNP | ti | map_l100_m2_e1 | * | 99.6774 | 99.5898 | 99.7651 | 64.5884 | 49282 | 203 | 49275 | 116 | 21 | 18.1034 | |
| hfeng-pmm3 | SNP | ti | map_l100_m2_e1 | het | 99.5633 | 99.4315 | 99.6955 | 65.7255 | 30784 | 176 | 30777 | 94 | 9 | 9.5745 | |
| hfeng-pmm3 | SNP | ti | map_l100_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.2000 | 31 | 0 | 31 | 0 | 0 | ||
| hfeng-pmm3 | SNP | ti | map_l100_m2_e1 | homalt | 99.8675 | 99.8540 | 99.8810 | 62.4833 | 18467 | 27 | 18467 | 22 | 12 | 54.5455 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l100_m2_e1 | * | 98.9946 | 98.7097 | 99.2811 | 82.7868 | 1377 | 18 | 1381 | 10 | 3 | 30.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l100_m2_e1 | het | 98.7593 | 98.1481 | 99.3781 | 83.5851 | 795 | 15 | 799 | 5 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 89.2308 | 42 | 3 | 42 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | map_l100_m2_e1 | homalt | 99.5392 | 100.0000 | 99.0826 | 80.4869 | 540 | 0 | 540 | 5 | 3 | 60.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l100_m2_e1 | * | 95.0673 | 91.3793 | 99.0654 | 86.7081 | 106 | 10 | 106 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l100_m2_e1 | het | 94.0171 | 90.1639 | 98.2143 | 86.3747 | 55 | 6 | 55 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 95.2381 | 90.9091 | 100.0000 | 84.6154 | 20 | 2 | 20 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | map_l100_m2_e1 | homalt | 96.8750 | 93.9394 | 100.0000 | 88.2576 | 31 | 2 | 31 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l100_m2_e1 | * | 90.1554 | 89.6907 | 90.6250 | 93.3194 | 87 | 10 | 87 | 9 | 2 | 22.2222 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l100_m2_e1 | het | 90.3067 | 94.1176 | 86.7925 | 94.6138 | 48 | 3 | 46 | 7 | 2 | 28.5714 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 88.8889 | 80.0000 | 100.0000 | 77.3913 | 24 | 6 | 26 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 90.9091 | 93.7500 | 88.2353 | 94.9704 | 15 | 1 | 15 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | map_l100_m2_e1 | * | 96.8343 | 94.5455 | 99.2366 | 84.9771 | 260 | 15 | 260 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | map_l100_m2_e1 | het | 97.7612 | 97.0370 | 98.4962 | 87.8205 | 131 | 4 | 131 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 93.4307 | 87.6712 | 100.0000 | 73.7705 | 64 | 9 | 64 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | map_l100_m2_e1 | homalt | 98.4848 | 97.0149 | 100.0000 | 84.0686 | 65 | 2 | 65 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | map_l100_m2_e1 | * | 90.5660 | 92.3077 | 88.8889 | 94.8473 | 24 | 2 | 24 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l100_m2_e1 | het | 94.4444 | 94.4444 | 94.4444 | 93.2836 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l100_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 94.2857 | 2 | 1 | 2 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 83.3333 | 100.0000 | 71.4286 | 96.8326 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l100_m2_e1 | * | 99.0966 | 98.9170 | 99.2769 | 81.5232 | 1918 | 21 | 1922 | 14 | 3 | 21.4286 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l100_m2_e1 | het | 99.0158 | 99.0536 | 98.9780 | 81.3490 | 1256 | 12 | 1259 | 13 | 2 | 15.3846 | |