PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
29201-29250 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 97.7778 | 97.7778 | 97.7778 | 90.3433 | 44 | 1 | 44 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l100_m2_e1 | homalt | 99.1674 | 99.2593 | 99.0758 | 83.1779 | 536 | 4 | 536 | 5 | 2 | 40.0000 | |
| egarrison-hhga | INDEL | I6_15 | map_l100_m2_e1 | * | 94.6903 | 92.2414 | 97.2727 | 85.9335 | 107 | 9 | 107 | 3 | 2 | 66.6667 | |
| egarrison-hhga | INDEL | I6_15 | map_l100_m2_e1 | het | 94.9153 | 91.8033 | 98.2456 | 85.9606 | 56 | 5 | 56 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m2_e1 | * | 35.9447 | 23.0769 | 81.2500 | 73.3333 | 6 | 20 | 13 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m2_e1 | het | 34.9515 | 22.2222 | 81.8182 | 68.5714 | 4 | 14 | 9 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 53.3333 | 40.0000 | 80.0000 | 79.1667 | 2 | 3 | 4 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l100_m2_e1 | * | 96.2343 | 95.9857 | 96.4842 | 82.1695 | 1339 | 56 | 2168 | 79 | 60 | 75.9494 | |
| eyeh-varpipe | INDEL | I1_5 | map_l100_m2_e1 | het | 96.9546 | 97.2840 | 96.6275 | 81.2002 | 788 | 22 | 1232 | 43 | 28 | 65.1163 | |
| eyeh-varpipe | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 61.9926 | 46.6667 | 92.3077 | 90.4936 | 21 | 24 | 48 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l100_m2_e1 | homalt | 97.3281 | 98.1481 | 96.5217 | 82.5526 | 530 | 10 | 888 | 32 | 29 | 90.6250 | |
| eyeh-varpipe | INDEL | I6_15 | map_l100_m2_e1 | * | 76.1809 | 68.1034 | 86.4322 | 76.0241 | 79 | 37 | 172 | 27 | 25 | 92.5926 | |
| eyeh-varpipe | INDEL | I6_15 | map_l100_m2_e1 | het | 79.0220 | 72.1311 | 87.3684 | 76.4851 | 44 | 17 | 83 | 12 | 10 | 83.3333 | |
| eyeh-varpipe | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 62.5000 | 45.4545 | 100.0000 | 65.9341 | 10 | 12 | 31 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l100_m2_e1 | homalt | 77.5608 | 75.7576 | 79.4521 | 78.2090 | 25 | 8 | 58 | 15 | 15 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l100_m2_e1 | * | 76.5753 | 70.9091 | 83.2258 | 83.8877 | 195 | 80 | 258 | 52 | 48 | 92.3077 | |
| eyeh-varpipe | INDEL | D6_15 | map_l100_m2_e1 | het | 91.2869 | 91.1111 | 91.4634 | 82.8452 | 123 | 12 | 150 | 14 | 13 | 92.8571 | |
| eyeh-varpipe | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 35.9551 | 21.9178 | 100.0000 | 84.8780 | 16 | 57 | 31 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | map_l100_m2_e1 | homalt | 74.3512 | 83.5821 | 66.9565 | 84.9279 | 56 | 11 | 77 | 38 | 35 | 92.1053 | |
| eyeh-varpipe | INDEL | C1_5 | map_l100_m2_e1 | * | 0.0000 | 0.0000 | 89.4737 | 95.5582 | 0 | 0 | 68 | 8 | 3 | 37.5000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 87.1795 | 95.5017 | 0 | 0 | 34 | 5 | 2 | 40.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 100.0000 | 98.4436 | 0 | 0 | 4 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | map_l100_m2_e1 | homalt | 0.0000 | 0.0000 | 90.9091 | 94.3782 | 0 | 0 | 30 | 3 | 1 | 33.3333 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m2_e1 | * | 58.1706 | 46.3918 | 77.9661 | 85.9857 | 45 | 52 | 46 | 13 | 12 | 92.3077 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m2_e1 | het | 75.4265 | 68.6275 | 83.7209 | 82.8685 | 35 | 16 | 36 | 7 | 7 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 12.5000 | 6.6667 | 100.0000 | 93.7500 | 2 | 28 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 53.3333 | 50.0000 | 57.1429 | 89.8551 | 8 | 8 | 8 | 6 | 5 | 83.3333 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m2_e1 | * | 96.9835 | 96.5962 | 97.3739 | 84.0045 | 1873 | 66 | 2336 | 63 | 38 | 60.3175 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m2_e1 | het | 98.2268 | 98.1073 | 98.3466 | 82.2535 | 1244 | 24 | 1487 | 25 | 8 | 32.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 50.4854 | 35.2941 | 88.6364 | 93.5007 | 18 | 33 | 39 | 5 | 3 | 60.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m2_e1 | homalt | 97.3013 | 98.5484 | 96.0854 | 85.4680 | 611 | 9 | 810 | 33 | 27 | 81.8182 | |
| eyeh-varpipe | INDEL | C6_15 | map_l100_m2_e1 | * | 0.0000 | 0.0000 | 100.0000 | 95.9821 | 0 | 0 | 9 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 100.0000 | 96.1165 | 0 | 0 | 4 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 100.0000 | 97.0588 | 0 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | map_l100_m2_e1 | homalt | 0.0000 | 0.0000 | 100.0000 | 95.4023 | 0 | 0 | 4 | 0 | 0 | ||
| egarrison-hhga | INDEL | D1_5 | map_l100_m2_e1 | * | 98.0898 | 97.9887 | 98.1912 | 83.7299 | 1900 | 39 | 1900 | 35 | 13 | 37.1429 | |
| egarrison-hhga | INDEL | D1_5 | map_l100_m2_e1 | het | 98.0355 | 98.3438 | 97.7291 | 83.2875 | 1247 | 21 | 1248 | 29 | 8 | 27.5862 | |
| egarrison-hhga | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 84.4191 | 74.5098 | 97.3684 | 91.9149 | 38 | 13 | 37 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_l100_m2_e1 | homalt | 99.1935 | 99.1935 | 99.1935 | 83.6066 | 615 | 5 | 615 | 5 | 4 | 80.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l100_m2_e1 | * | 90.1715 | 88.0000 | 92.4528 | 85.4555 | 242 | 33 | 245 | 20 | 12 | 60.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l100_m2_e1 | het | 94.2427 | 98.5185 | 90.3226 | 87.0184 | 133 | 2 | 140 | 15 | 10 | 66.6667 | |
| egarrison-hhga | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 74.8782 | 61.6438 | 95.3488 | 77.1277 | 45 | 28 | 41 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l100_m2_e1 | homalt | 95.5224 | 95.5224 | 95.5224 | 84.7727 | 64 | 3 | 64 | 3 | 1 | 33.3333 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l100_m2_e1 | * | 79.6555 | 76.2887 | 83.3333 | 87.4652 | 74 | 23 | 75 | 15 | 11 | 73.3333 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l100_m2_e1 | het | 84.8918 | 92.1569 | 78.6885 | 88.0626 | 47 | 4 | 48 | 13 | 10 | 76.9231 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 65.2174 | 50.0000 | 93.7500 | 72.8814 | 15 | 15 | 15 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 82.7586 | 75.0000 | 92.3077 | 91.2162 | 12 | 4 | 12 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | * | map_l100_m2_e1 | * | 97.3869 | 97.1778 | 97.5968 | 97.6235 | 3650 | 106 | 3655 | 90 | 41 | 45.5556 | |
| egarrison-hhga | INDEL | * | map_l100_m2_e1 | het | 97.4787 | 97.9513 | 97.0105 | 84.5478 | 2295 | 48 | 2304 | 71 | 31 | 43.6620 | |