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Explore HG002 comparison results
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EntryTypeSubtypeSubset GenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
29001-29050 / 86044 show all
bgallagher-sentieonSNPtimap_l100_m2_e1*
99.4649
99.5494
99.3806
66.3075
492622234925530750
16.2866
bgallagher-sentieonSNPtimap_l100_m2_e1het
99.2699
99.4832
99.0575
69.3770
308001603079329338
12.9693
bgallagher-sentieonSNPtimap_l100_m2_e1hetalt
98.3607
96.7742
100.0000
69.6970
3013000
bgallagher-sentieonSNPtimap_l100_m2_e1homalt
99.7943
99.6648
99.9241
59.4504
1843262184321412
85.7143
bgallagher-sentieonSNPtvmap_l100_m2_e1*
99.3647
99.6084
99.1222
68.5080
25184992518022331
13.9013
bgallagher-sentieonSNPtvmap_l100_m2_e1het
99.1255
99.5859
98.6693
71.4407
15872661586821425
11.6822
bgallagher-sentieonSNPtvmap_l100_m2_e1hetalt
97.6190
95.3488
100.0000
72.2973
4124100
bgallagher-sentieonSNPtvmap_l100_m2_e1homalt
99.7847
99.6667
99.9030
61.6624
927131927196
66.6667
bgallagher-sentieonINDELI6_15map_l100_m2_e1*
96.4912
94.8276
98.2143
88.6525
110611021
50.0000
bgallagher-sentieonINDELI6_15map_l100_m2_e1het
95.8678
95.0820
96.6667
88.9706
5835821
50.0000
bgallagher-sentieonINDELI6_15map_l100_m2_e1hetalt
95.2381
90.9091
100.0000
82.9060
2022000
bgallagher-sentieonINDELI6_15map_l100_m2_e1homalt
98.4615
96.9697
100.0000
90.1840
3213200
bgallagher-sentieonSNP*map_l100_m2_e1*
99.4314
99.5705
99.2927
67.0857
744163217440553081
15.2830
bgallagher-sentieonSNP*map_l100_m2_e1het
99.2207
99.5181
98.9251
70.1134
466722264666150763
12.4260
bgallagher-sentieonSNP*map_l100_m2_e1hetalt
97.6190
95.3488
100.0000
72.2973
4124100
bgallagher-sentieonSNP*map_l100_m2_e1homalt
99.7911
99.6654
99.9170
60.2187
2770393277032318
78.2609
asubramanian-gatkSNPtimap_l100_m2_e1*
62.6607
45.6542
99.8585
84.1129
2259226893225883212
37.5000
asubramanian-gatkSNPtimap_l100_m2_e1het
65.2727
48.4981
99.7873
85.9875
1501515945150113212
37.5000
asubramanian-gatkSNPtimap_l100_m2_e1hetalt
55.8140
38.7097
100.0000
88.7850
12191200
asubramanian-gatkSNPtimap_l100_m2_e1homalt
58.0606
40.9052
100.0000
78.3356
756510929756500
asubramanian-gatkSNPtvmap_l100_m2_e1*
58.2603
41.1264
99.8655
87.2297
103981488510396142
14.2857
asubramanian-gatkSNPtvmap_l100_m2_e1het
61.4944
44.4347
99.8167
88.7261
708288567080132
15.3846
asubramanian-gatkSNPtvmap_l100_m2_e1hetalt
51.7241
34.8837
100.0000
90.6832
15281500
asubramanian-gatkSNPtvmap_l100_m2_e1homalt
52.3802
35.4870
99.9697
82.0942
33016001330110
0.0000
asubramanian-gatkSNP*map_l100_m2_e1*
61.2013
44.1254
99.8365
85.2564
3297841759329725414
25.9259
asubramanian-gatkSNP*map_l100_m2_e1het
64.0057
47.1171
99.7652
87.0062
2209724801220915214
26.9231
asubramanian-gatkSNP*map_l100_m2_e1hetalt
51.7241
34.8837
100.0000
90.7407
15281500
asubramanian-gatkSNP*map_l100_m2_e1homalt
56.2073
39.0920
99.9816
79.6586
10866169301086620
0.0000
asubramanian-gatkINDELD1_5map_l100_m2_e1*
93.0516
89.7370
96.6205
87.5894
17401991744617
11.4754
asubramanian-gatkINDELD1_5map_l100_m2_e1het
91.0922
87.4606
95.0385
88.5235
11091591111586
10.3448
asubramanian-gatkINDELD1_5map_l100_m2_e1hetalt
96.9697
94.1176
100.0000
90.9259
4834900
asubramanian-gatkINDELD1_5map_l100_m2_e1homalt
96.6837
94.0323
99.4889
84.6255
5833758431
33.3333
asubramanian-gatkINDELD6_15map_l100_m2_e1*
93.4397
90.5455
96.5251
89.0301
2492625093
33.3333
asubramanian-gatkINDELD6_15map_l100_m2_e1het
92.0981
90.3704
93.8931
91.8176
1221312382
25.0000
asubramanian-gatkINDELD6_15map_l100_m2_e1hetalt
95.0355
91.7808
98.5294
74.4361
6766711
100.0000
asubramanian-gatkINDELD6_15map_l100_m2_e1homalt
94.4882
89.5522
100.0000
87.8543
6076000
asubramanian-gatkINDELI1_5map_l100_m2_e1*
91.2086
85.0896
98.2759
87.9905
11872081197214
19.0476
asubramanian-gatkINDELI1_5map_l100_m2_e1het
87.1298
78.8889
97.2932
90.0657
639171647182
11.1111
asubramanian-gatkINDELI1_5map_l100_m2_e1hetalt
96.6292
95.5556
97.7273
90.1345
4324310
0.0000
asubramanian-gatkINDELI1_5map_l100_m2_e1homalt
96.4668
93.5185
99.6071
83.0446
5053550722
100.0000
asubramanian-gatkINDELI6_15map_l100_m2_e1*
93.2442
88.7931
98.1651
89.8793
1031310721
50.0000
asubramanian-gatkINDELI6_15map_l100_m2_e1het
92.3908
88.5246
96.6102
90.6051
5475721
50.0000
asubramanian-gatkINDELI6_15map_l100_m2_e1hetalt
95.2381
90.9091
100.0000
82.6446
2022100
asubramanian-gatkINDELI6_15map_l100_m2_e1homalt
93.5484
87.8788
100.0000
91.1585
2942900
asubramanian-gatkINDELI16_PLUSmap_l100_m2_e1*
86.2745
84.6154
88.0000
96.2798
2242230
0.0000
asubramanian-gatkINDELI16_PLUSmap_l100_m2_e1het
85.7143
83.3333
88.2353
95.7500
1531520
0.0000
asubramanian-gatkINDELI16_PLUSmap_l100_m2_e1hetalt
80.0000
66.6667
100.0000
95.0000
21200
asubramanian-gatkINDELI16_PLUSmap_l100_m2_e1homalt
90.9091
100.0000
83.3333
97.4138
50510
0.0000
anovak-vgINDELD1_5map_l100_m2_e1*
84.5768
85.6111
83.5671
84.5427
16602791668328123
37.5000
anovak-vgINDELD1_5map_l100_m2_e1het
83.2523
87.6183
79.3007
85.1706
1111157113429694
31.7568