PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
28851-28900 / 86044 show all | |||||||||||||||
| eyeh-varpipe | SNP | tv | map_l100_m2_e1 | hetalt | 99.4012 | 100.0000 | 98.8095 | 70.6294 | 43 | 0 | 166 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | SNP | tv | map_l100_m2_e1 | homalt | 99.8487 | 99.8280 | 99.8695 | 67.1866 | 9286 | 16 | 9182 | 12 | 4 | 33.3333 | |
| gduggal-bwafb | INDEL | * | map_l100_m2_e1 | * | 96.0874 | 94.0096 | 98.2592 | 84.3618 | 3531 | 225 | 3556 | 63 | 22 | 34.9206 | |
| gduggal-bwafb | INDEL | * | map_l100_m2_e1 | het | 95.8207 | 93.7687 | 97.9645 | 83.6078 | 2197 | 146 | 2262 | 47 | 8 | 17.0213 | |
| gduggal-bwafb | INDEL | * | map_l100_m2_e1 | hetalt | 73.5849 | 59.0909 | 97.5000 | 93.2660 | 78 | 54 | 39 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | * | map_l100_m2_e1 | homalt | 98.4321 | 98.0484 | 98.8189 | 84.9917 | 1256 | 25 | 1255 | 15 | 13 | 86.6667 | |
| eyeh-varpipe | SNP | ti | map_l100_m2_e1 | * | 99.3531 | 99.7211 | 98.9878 | 69.0049 | 49347 | 138 | 48410 | 495 | 32 | 6.4647 | |
| eyeh-varpipe | SNP | ti | map_l100_m2_e1 | het | 99.0385 | 99.6286 | 98.4553 | 71.2000 | 30845 | 115 | 30148 | 473 | 19 | 4.0169 | |
| eyeh-varpipe | SNP | ti | map_l100_m2_e1 | hetalt | 99.8192 | 100.0000 | 99.6390 | 65.8025 | 31 | 0 | 276 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | ti | map_l100_m2_e1 | homalt | 99.8795 | 99.8756 | 99.8834 | 64.4482 | 18471 | 23 | 17986 | 21 | 12 | 57.1429 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m2_e1 | * | 82.9443 | 71.4801 | 98.7883 | 92.1357 | 1386 | 553 | 1386 | 17 | 7 | 41.1765 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m2_e1 | het | 84.9192 | 74.6057 | 98.5417 | 92.9073 | 946 | 322 | 946 | 14 | 5 | 35.7143 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 73.1707 | 58.8235 | 96.7742 | 96.3869 | 30 | 21 | 30 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m2_e1 | homalt | 79.4574 | 66.1290 | 99.5146 | 88.0476 | 410 | 210 | 410 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l100_m2_e1 | * | 75.1678 | 61.0909 | 97.6744 | 94.2049 | 168 | 107 | 168 | 4 | 1 | 25.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l100_m2_e1 | het | 77.5330 | 65.1852 | 95.6522 | 95.8633 | 88 | 47 | 88 | 4 | 1 | 25.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 64.8148 | 47.9452 | 100.0000 | 90.3315 | 35 | 38 | 35 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l100_m2_e1 | homalt | 80.3571 | 67.1642 | 100.0000 | 88.2199 | 45 | 22 | 45 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l100_m2_e1 | * | 60.9929 | 44.3299 | 97.7273 | 95.8015 | 43 | 54 | 43 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | map_l100_m2_e1 | het | 70.0000 | 54.9020 | 96.5517 | 96.4976 | 28 | 23 | 28 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 37.8378 | 23.3333 | 100.0000 | 92.7835 | 7 | 23 | 7 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 66.6667 | 50.0000 | 100.0000 | 93.4959 | 8 | 8 | 8 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_l100_m2_e1 | * | 98.8936 | 99.1694 | 98.6194 | 70.5239 | 25073 | 210 | 25073 | 351 | 56 | 15.9544 | |
| gduggal-bwafb | SNP | tv | map_l100_m2_e1 | het | 98.4812 | 99.0651 | 97.9041 | 72.6029 | 15789 | 149 | 15789 | 338 | 49 | 14.4970 | |
| gduggal-bwafb | SNP | tv | map_l100_m2_e1 | hetalt | 98.8235 | 97.6744 | 100.0000 | 77.6596 | 42 | 1 | 42 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_l100_m2_e1 | homalt | 99.6066 | 99.3550 | 99.8595 | 65.9755 | 9242 | 60 | 9242 | 13 | 7 | 53.8462 | |
| gduggal-bwaplat | INDEL | * | map_l100_m2_e1 | * | 80.6558 | 68.1044 | 98.8790 | 92.5655 | 2558 | 1198 | 2558 | 29 | 11 | 37.9310 | |
| gduggal-bwaplat | INDEL | * | map_l100_m2_e1 | het | 83.4646 | 72.3858 | 98.5474 | 93.4041 | 1696 | 647 | 1696 | 25 | 8 | 32.0000 | |
| gduggal-bwaplat | INDEL | * | map_l100_m2_e1 | hetalt | 63.5897 | 46.9697 | 98.4127 | 95.7461 | 62 | 70 | 62 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | * | map_l100_m2_e1 | homalt | 76.7754 | 62.4512 | 99.6264 | 88.8843 | 800 | 481 | 800 | 3 | 2 | 66.6667 | |
| gduggal-bwaplat | INDEL | C1_5 | map_l100_m2_e1 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | C1_5 | map_l100_m2_e1 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | C1_5 | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C1_5 | map_l100_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | C6_15 | map_l100_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | map_l100_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | map_l100_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | map_l100_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | * | map_l100_m2_e1 | * | 90.3682 | 92.8381 | 88.0262 | 88.0620 | 3487 | 269 | 3492 | 475 | 199 | 41.8947 | |
| gduggal-bwavard | INDEL | * | map_l100_m2_e1 | het | 89.9944 | 98.0794 | 83.1408 | 90.1047 | 2298 | 45 | 2303 | 467 | 194 | 41.5418 | |
| gduggal-bwavard | INDEL | * | map_l100_m2_e1 | hetalt | 0.0000 | 1.5152 | 0.0000 | 0.0000 | 2 | 130 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | map_l100_m2_e1 | homalt | 95.8810 | 92.6620 | 99.3317 | 77.1434 | 1187 | 94 | 1189 | 8 | 5 | 62.5000 | |
| gduggal-bwavard | INDEL | C16_PLUS | map_l100_m2_e1 | * | 0.0000 | 0.0000 | 20.0000 | 97.4227 | 0 | 0 | 1 | 4 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 20.0000 | 97.0238 | 0 | 0 | 1 | 4 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | C16_PLUS | map_l100_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||