PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
28751-28800 / 86044 show all | |||||||||||||||
| gduggal-bwavard | SNP | * | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 43 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | * | map_l100_m2_e1 | homalt | 98.6017 | 97.3521 | 99.8837 | 62.7989 | 27060 | 736 | 26631 | 31 | 25 | 80.6452 | |
| gduggal-bwavard | SNP | tv | map_l100_m2_e1 | * | 95.9192 | 97.7930 | 94.1158 | 76.6728 | 24725 | 558 | 24632 | 1540 | 101 | 6.5584 | |
| gduggal-bwavard | SNP | tv | map_l100_m2_e1 | het | 94.4719 | 98.1303 | 91.0764 | 80.3818 | 15640 | 298 | 15585 | 1527 | 90 | 5.8939 | |
| gduggal-bwavard | SNP | tv | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 43 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | tv | map_l100_m2_e1 | homalt | 98.7497 | 97.6672 | 99.8565 | 63.7165 | 9085 | 217 | 9047 | 13 | 11 | 84.6154 | |
| gduggal-snapfb | INDEL | * | map_l100_m2_e1 | * | 93.3057 | 90.9478 | 95.7892 | 85.0002 | 3416 | 340 | 3435 | 151 | 40 | 26.4901 | |
| gduggal-snapfb | INDEL | * | map_l100_m2_e1 | het | 92.9455 | 91.2079 | 94.7505 | 82.9512 | 2137 | 206 | 2184 | 121 | 22 | 18.1818 | |
| gduggal-snapfb | INDEL | * | map_l100_m2_e1 | hetalt | 59.5248 | 47.7273 | 79.0698 | 93.2917 | 63 | 69 | 34 | 9 | 5 | 55.5556 | |
| gduggal-snapfb | INDEL | * | map_l100_m2_e1 | homalt | 96.5853 | 94.9258 | 98.3037 | 87.2974 | 1216 | 65 | 1217 | 21 | 13 | 61.9048 | |
| gduggal-bwavard | SNP | ti | map_l100_m2_e1 | * | 96.6812 | 97.1951 | 96.1726 | 74.8216 | 48097 | 1388 | 47642 | 1896 | 159 | 8.3861 | |
| gduggal-bwavard | SNP | ti | map_l100_m2_e1 | het | 95.6635 | 97.2933 | 94.0874 | 78.7700 | 30122 | 838 | 29869 | 1877 | 144 | 7.6718 | |
| gduggal-bwavard | SNP | ti | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 31 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | ti | map_l100_m2_e1 | homalt | 98.5250 | 97.1937 | 99.8932 | 62.3163 | 17975 | 519 | 17773 | 19 | 15 | 78.9474 | |
| gduggal-snapfb | SNP | * | map_l100_m2_e1 | * | 97.7287 | 97.8404 | 97.6173 | 69.6430 | 73123 | 1614 | 73129 | 1785 | 689 | 38.5994 | |
| gduggal-snapfb | SNP | * | map_l100_m2_e1 | het | 97.3145 | 98.2025 | 96.4425 | 69.0883 | 46055 | 843 | 46059 | 1699 | 659 | 38.7875 | |
| gduggal-snapfb | SNP | * | map_l100_m2_e1 | hetalt | 94.2529 | 95.3488 | 93.1818 | 86.1635 | 41 | 2 | 41 | 3 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | * | map_l100_m2_e1 | homalt | 98.4483 | 97.2334 | 99.6939 | 70.5179 | 27027 | 769 | 27029 | 83 | 30 | 36.1446 | |
| gduggal-snapfb | SNP | ti | map_l100_m2_e1 | * | 97.8010 | 97.7367 | 97.8655 | 68.4763 | 48365 | 1120 | 48370 | 1055 | 457 | 43.3175 | |
| gduggal-snapfb | SNP | ti | map_l100_m2_e1 | het | 97.4111 | 98.0685 | 96.7625 | 68.1401 | 30362 | 598 | 30366 | 1016 | 436 | 42.9134 | |
| gduggal-snapfb | SNP | ti | map_l100_m2_e1 | hetalt | 95.2381 | 96.7742 | 93.7500 | 84.5411 | 30 | 1 | 30 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | map_l100_m2_e1 | homalt | 98.4714 | 97.1829 | 99.7946 | 68.9893 | 17973 | 521 | 17974 | 37 | 21 | 56.7568 | |
| gduggal-snapfb | INDEL | I6_15 | map_l100_m2_e1 | * | 81.0925 | 72.4138 | 92.1348 | 79.2056 | 84 | 32 | 82 | 7 | 6 | 85.7143 | |
| gduggal-snapfb | INDEL | I6_15 | map_l100_m2_e1 | het | 84.5604 | 78.6885 | 91.3793 | 74.8918 | 48 | 13 | 53 | 5 | 4 | 80.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 66.1017 | 59.0909 | 75.0000 | 72.4138 | 13 | 9 | 6 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l100_m2_e1 | homalt | 82.1429 | 69.6970 | 100.0000 | 86.3095 | 23 | 10 | 23 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D16_PLUS | map_l100_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 97 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 51 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 30 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 16 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | map_l100_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 26 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 18 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 5 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I1_5 | map_l100_m2_e1 | * | 95.9578 | 96.3441 | 95.5746 | 86.0998 | 1344 | 51 | 1339 | 62 | 13 | 20.9677 | |
| gduggal-snapfb | INDEL | I1_5 | map_l100_m2_e1 | het | 95.1055 | 95.6790 | 94.5388 | 84.7999 | 775 | 35 | 779 | 45 | 6 | 13.3333 | |
| gduggal-snapfb | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 75.3210 | 73.3333 | 77.4194 | 92.1717 | 33 | 12 | 24 | 7 | 3 | 42.8571 | |
| gduggal-snapfb | INDEL | I1_5 | map_l100_m2_e1 | homalt | 98.7109 | 99.2593 | 98.1685 | 87.1891 | 536 | 4 | 536 | 10 | 4 | 40.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l100_m2_e1 | * | 96.0476 | 95.9257 | 96.1698 | 84.5601 | 1860 | 79 | 1858 | 74 | 14 | 18.9189 | |
| gduggal-snapfb | INDEL | D1_5 | map_l100_m2_e1 | het | 95.6362 | 96.3722 | 94.9113 | 82.2863 | 1222 | 46 | 1231 | 66 | 8 | 12.1212 | |
| gduggal-snapfb | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 72.5806 | 58.8235 | 94.7368 | 94.8087 | 30 | 21 | 18 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l100_m2_e1 | homalt | 98.4625 | 98.0645 | 98.8636 | 87.2332 | 608 | 12 | 609 | 7 | 5 | 71.4286 | |
| gduggal-snapfb | INDEL | D6_15 | map_l100_m2_e1 | * | 75.6012 | 62.9091 | 94.7090 | 81.7919 | 173 | 102 | 179 | 10 | 9 | 90.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l100_m2_e1 | het | 79.7221 | 68.1481 | 96.0317 | 76.1815 | 92 | 43 | 121 | 5 | 4 | 80.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 58.9560 | 43.8356 | 90.0000 | 72.9730 | 32 | 41 | 9 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l100_m2_e1 | homalt | 81.6667 | 73.1343 | 92.4528 | 88.7712 | 49 | 18 | 49 | 4 | 4 | 100.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l100_m2_e1 | * | 69.3878 | 65.3846 | 73.9130 | 91.9861 | 17 | 9 | 17 | 6 | 3 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l100_m2_e1 | het | 76.9231 | 83.3333 | 71.4286 | 91.9847 | 15 | 3 | 15 | 6 | 3 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 57.1429 | 40.0000 | 100.0000 | 92.0000 | 2 | 3 | 2 | 0 | 0 | ||