PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
28501-28550 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | D1_5 | map_l100_m2_e1 | * | 97.6961 | 97.3182 | 98.0769 | 82.8076 | 1887 | 52 | 1887 | 37 | 17 | 45.9459 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l100_m2_e1 | het | 97.7909 | 97.7129 | 97.8690 | 82.3415 | 1239 | 29 | 1240 | 27 | 9 | 33.3333 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 77.1930 | 66.6667 | 91.6667 | 92.2414 | 34 | 17 | 33 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l100_m2_e1 | homalt | 98.9525 | 99.0323 | 98.8728 | 82.5169 | 614 | 6 | 614 | 7 | 6 | 85.7143 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l100_m2_e1 | * | 90.1374 | 89.0909 | 91.2088 | 85.8549 | 245 | 30 | 249 | 24 | 12 | 50.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l100_m2_e1 | het | 93.0123 | 97.0370 | 89.3082 | 87.6072 | 131 | 4 | 142 | 17 | 9 | 52.9412 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 77.6313 | 68.4932 | 89.5833 | 74.3316 | 50 | 23 | 43 | 5 | 2 | 40.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l100_m2_e1 | homalt | 96.2406 | 95.5224 | 96.9697 | 85.6522 | 64 | 3 | 64 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m2_e1 | * | 80.0000 | 76.9231 | 83.3333 | 90.8397 | 20 | 6 | 20 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m2_e1 | het | 83.3333 | 83.3333 | 83.3333 | 89.2857 | 15 | 3 | 15 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.0000 | 3 | 0 | 3 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 50.0000 | 40.0000 | 66.6667 | 95.6522 | 2 | 3 | 2 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m2_e1 | * | 83.7401 | 81.4433 | 86.1702 | 87.8866 | 79 | 18 | 81 | 13 | 6 | 46.1538 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m2_e1 | het | 86.6290 | 90.1961 | 83.3333 | 89.3238 | 46 | 5 | 50 | 10 | 5 | 50.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 76.5957 | 66.6667 | 90.0000 | 71.0145 | 20 | 10 | 18 | 2 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 86.6667 | 81.2500 | 92.8571 | 90.3448 | 13 | 3 | 13 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | SNP | ti | map_l100_m2_e1 | * | 99.2480 | 98.6784 | 99.8242 | 55.9018 | 48831 | 654 | 48833 | 86 | 19 | 22.0930 | |
| ltrigg-rtg2 | SNP | ti | map_l100_m2_e1 | het | 98.9153 | 98.0846 | 99.7602 | 53.1134 | 30367 | 593 | 30370 | 73 | 6 | 8.2192 | |
| ltrigg-rtg2 | SNP | ti | map_l100_m2_e1 | hetalt | 96.6667 | 93.5484 | 100.0000 | 63.7500 | 29 | 2 | 29 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | ti | map_l100_m2_e1 | homalt | 99.8051 | 99.6810 | 99.9295 | 59.8306 | 18435 | 59 | 18434 | 13 | 13 | 100.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l100_m2_e1 | * | 99.1807 | 98.6394 | 99.7280 | 56.7507 | 24939 | 344 | 24934 | 68 | 5 | 7.3529 | |
| ltrigg-rtg2 | SNP | tv | map_l100_m2_e1 | het | 98.8079 | 98.0299 | 99.5983 | 53.4836 | 15624 | 314 | 15620 | 63 | 2 | 3.1746 | |
| ltrigg-rtg2 | SNP | tv | map_l100_m2_e1 | hetalt | 96.3855 | 93.0233 | 100.0000 | 65.5172 | 40 | 3 | 40 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | map_l100_m2_e1 | homalt | 99.8278 | 99.7097 | 99.9461 | 61.3020 | 9275 | 27 | 9274 | 5 | 3 | 60.0000 | |
| ltrigg-rtg2 | SNP | * | map_l100_m2_e1 | * | 99.2263 | 98.6673 | 99.7916 | 56.2116 | 73741 | 996 | 73738 | 154 | 24 | 15.5844 | |
| ltrigg-rtg2 | SNP | * | map_l100_m2_e1 | het | 98.8788 | 98.0660 | 99.7052 | 53.2399 | 45991 | 907 | 45990 | 136 | 8 | 5.8824 | |
| ltrigg-rtg2 | SNP | * | map_l100_m2_e1 | hetalt | 96.3855 | 93.0233 | 100.0000 | 65.5172 | 40 | 3 | 40 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | map_l100_m2_e1 | homalt | 99.8127 | 99.6906 | 99.9351 | 60.3846 | 27710 | 86 | 27708 | 18 | 16 | 88.8889 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l100_m2_e1 | * | 98.0955 | 97.0088 | 99.2068 | 77.5974 | 1881 | 58 | 1876 | 15 | 2 | 13.3333 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l100_m2_e1 | het | 97.9674 | 97.0820 | 98.8691 | 75.9144 | 1231 | 37 | 1224 | 14 | 1 | 7.1429 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 91.4894 | 84.3137 | 100.0000 | 93.4066 | 43 | 8 | 42 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | map_l100_m2_e1 | homalt | 98.8603 | 97.9032 | 99.8363 | 77.0646 | 607 | 13 | 610 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | map_l100_m2_e1 | * | 96.0828 | 94.1818 | 98.0620 | 81.0294 | 259 | 16 | 253 | 5 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | map_l100_m2_e1 | het | 97.0148 | 97.0370 | 96.9925 | 83.3542 | 131 | 4 | 129 | 4 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 93.4307 | 87.6712 | 100.0000 | 77.5362 | 64 | 9 | 62 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | map_l100_m2_e1 | homalt | 96.9460 | 95.5224 | 98.4127 | 77.8947 | 64 | 3 | 62 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l100_m2_e1 | * | 98.0445 | 97.1326 | 98.9736 | 79.7926 | 1355 | 40 | 1350 | 14 | 2 | 14.2857 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l100_m2_e1 | het | 97.3736 | 96.2963 | 98.4752 | 78.2597 | 780 | 30 | 775 | 12 | 1 | 8.3333 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 94.1176 | 88.8889 | 100.0000 | 93.7591 | 40 | 5 | 43 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | map_l100_m2_e1 | homalt | 99.3490 | 99.0741 | 99.6255 | 78.1237 | 535 | 5 | 532 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | map_l100_m2_e1 | * | 95.9641 | 92.2414 | 100.0000 | 82.3328 | 107 | 9 | 103 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l100_m2_e1 | het | 95.7265 | 91.8033 | 100.0000 | 80.1471 | 56 | 5 | 54 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 95.2381 | 90.9091 | 100.0000 | 87.6623 | 20 | 2 | 19 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l100_m2_e1 | homalt | 96.8750 | 93.9394 | 100.0000 | 80.8917 | 31 | 2 | 30 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l100_m2_e1 | * | 79.7784 | 69.2308 | 94.1176 | 81.1111 | 18 | 8 | 16 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l100_m2_e1 | het | 84.6512 | 77.7778 | 92.8571 | 73.0769 | 14 | 4 | 13 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l100_m2_e1 | hetalt | 33.3333 | 100.0000 | 1 | 2 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 75.0000 | 60.0000 | 100.0000 | 86.9565 | 3 | 2 | 3 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | map_l100_m2_e1 | * | 74.8886 | 69.8182 | 80.7531 | 82.6560 | 192 | 83 | 193 | 46 | 35 | 76.0870 | |
| mlin-fermikit | INDEL | D6_15 | map_l100_m2_e1 | het | 76.0958 | 77.0370 | 75.1773 | 80.9202 | 104 | 31 | 106 | 35 | 25 | 71.4286 | |