PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
28101-28150 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | I6_15 | map_l125_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | I6_15 | map_l125_m0_e0 | homalt | 36.3636 | 33.3333 | 40.0000 | 87.1795 | 2 | 4 | 2 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | INDEL | C1_5 | map_l125_m0_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C1_5 | map_l125_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C1_5 | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C1_5 | map_l125_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | tv | map_l125_m0_e0 | * | 51.6639 | 38.2748 | 79.4606 | 60.5371 | 2538 | 4093 | 2534 | 655 | 574 | 87.6336 | |
| mlin-fermikit | SNP | tv | map_l125_m0_e0 | het | 48.9678 | 32.6289 | 98.0822 | 65.3700 | 1436 | 2965 | 1432 | 28 | 0 | 0.0000 | |
| mlin-fermikit | SNP | tv | map_l125_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 9 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | tv | map_l125_m0_e0 | homalt | 55.7975 | 49.6173 | 63.7363 | 55.1608 | 1102 | 1119 | 1102 | 627 | 574 | 91.5470 | |
| mlin-fermikit | SNP | * | map_l125_m0_e0 | * | 52.1003 | 37.9727 | 82.9686 | 58.9613 | 7361 | 12024 | 7356 | 1510 | 1338 | 88.6093 | |
| mlin-fermikit | SNP | * | map_l125_m0_e0 | het | 49.1614 | 32.7622 | 98.4323 | 62.8190 | 4149 | 8515 | 4144 | 66 | 3 | 4.5455 | |
| mlin-fermikit | SNP | * | map_l125_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 9 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | * | map_l125_m0_e0 | homalt | 56.5095 | 47.8546 | 68.9863 | 54.6729 | 3212 | 3500 | 3212 | 1444 | 1335 | 92.4515 | |
| mlin-fermikit | SNP | ti | map_l125_m0_e0 | * | 52.3097 | 37.7919 | 84.9392 | 57.8951 | 4823 | 7939 | 4822 | 855 | 764 | 89.3567 | |
| mlin-fermikit | SNP | ti | map_l125_m0_e0 | het | 49.2645 | 32.8331 | 98.6182 | 61.3058 | 2713 | 5550 | 2712 | 38 | 3 | 7.8947 | |
| mlin-fermikit | SNP | ti | map_l125_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 8 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | ti | map_l125_m0_e0 | homalt | 56.8886 | 46.9829 | 72.0875 | 54.0574 | 2110 | 2381 | 2110 | 817 | 761 | 93.1457 | |
| ndellapenna-hhga | INDEL | C16_PLUS | map_l125_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C16_PLUS | map_l125_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C16_PLUS | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | C16_PLUS | map_l125_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l125_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 93.7824 | 12 | 0 | 12 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l125_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 92.8000 | 9 | 0 | 9 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 1 | 0 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.2963 | 2 | 0 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | map_l125_m0_e0 | * | 97.8723 | 97.8723 | 97.8723 | 93.1785 | 46 | 1 | 46 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l125_m0_e0 | het | 96.5517 | 96.5517 | 96.5517 | 93.2715 | 28 | 1 | 28 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.4762 | 6 | 0 | 6 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.8462 | 12 | 0 | 12 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | map_l125_m0_e0 | * | 83.3333 | 83.3333 | 83.3333 | 81.2500 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_l125_m0_e0 | het | 85.7143 | 100.0000 | 75.0000 | 76.4706 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.0000 | 1 | 0 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | map_l125_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 90.0000 | 1 | 1 | 1 | 0 | 0 | ||
| rpoplin-dv42 | SNP | * | map_l125_m0_e0 | * | 98.7955 | 98.5969 | 98.9950 | 72.9367 | 19113 | 272 | 19110 | 194 | 120 | 61.8557 | |
| rpoplin-dv42 | SNP | * | map_l125_m0_e0 | het | 98.6495 | 98.6418 | 98.6571 | 74.4583 | 12492 | 172 | 12489 | 170 | 97 | 57.0588 | |
| rpoplin-dv42 | SNP | * | map_l125_m0_e0 | hetalt | 85.7143 | 100.0000 | 75.0000 | 88.4615 | 9 | 0 | 9 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | * | map_l125_m0_e0 | homalt | 99.0933 | 98.5101 | 99.6834 | 69.3810 | 6612 | 100 | 6612 | 21 | 20 | 95.2381 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l125_m0_e0 | * | 69.2308 | 60.0000 | 81.8182 | 94.9309 | 9 | 6 | 9 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l125_m0_e0 | het | 62.5000 | 55.5556 | 71.4286 | 93.9130 | 5 | 4 | 5 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l125_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | I6_15 | map_l125_m0_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 95.0000 | 4 | 2 | 4 | 0 | 0 | ||
| rpoplin-dv42 | SNP | ti | map_l125_m0_e0 | * | 98.9475 | 98.7149 | 99.1811 | 72.7585 | 12598 | 164 | 12596 | 104 | 70 | 67.3077 | |
| rpoplin-dv42 | SNP | ti | map_l125_m0_e0 | het | 98.8184 | 98.6930 | 98.9442 | 74.5223 | 8155 | 108 | 8153 | 87 | 54 | 62.0690 | |
| rpoplin-dv42 | SNP | ti | map_l125_m0_e0 | hetalt | 88.8889 | 100.0000 | 80.0000 | 86.3014 | 8 | 0 | 8 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | SNP | ti | map_l125_m0_e0 | homalt | 99.2059 | 98.7531 | 99.6629 | 68.6730 | 4435 | 56 | 4435 | 15 | 14 | 93.3333 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l125_m0_e0 | * | 98.3897 | 98.3871 | 98.3923 | 88.1388 | 305 | 5 | 306 | 5 | 1 | 20.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l125_m0_e0 | het | 98.4224 | 97.3958 | 99.4709 | 88.5938 | 187 | 5 | 188 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 80.0000 | 100.0000 | 66.6667 | 96.2733 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l125_m0_e0 | homalt | 99.1304 | 100.0000 | 98.2759 | 85.5721 | 114 | 0 | 114 | 2 | 1 | 50.0000 | |