PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
27351-27400 / 86044 show all | |||||||||||||||
| jpowers-varprowl | SNP | ti | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 8 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | ti | map_l125_m0_e0 | homalt | 98.7168 | 97.6397 | 99.8179 | 72.4456 | 4385 | 106 | 4385 | 8 | 6 | 75.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l125_m0_e0 | * | 94.3709 | 91.9355 | 96.9388 | 89.0052 | 285 | 25 | 285 | 9 | 6 | 66.6667 | |
| jpowers-varprowl | INDEL | I1_5 | map_l125_m0_e0 | het | 93.6170 | 91.6667 | 95.6522 | 91.4019 | 176 | 16 | 176 | 8 | 5 | 62.5000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I1_5 | map_l125_m0_e0 | homalt | 97.3214 | 95.6140 | 99.0909 | 79.4007 | 109 | 5 | 109 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l125_m0_e0 | * | 56.0000 | 46.6667 | 70.0000 | 94.1176 | 7 | 8 | 7 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l125_m0_e0 | het | 42.8571 | 33.3333 | 60.0000 | 96.2963 | 3 | 6 | 3 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I6_15 | map_l125_m0_e0 | homalt | 72.7273 | 66.6667 | 80.0000 | 85.7143 | 4 | 2 | 4 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l125_m0_e0 | * | 95.9750 | 93.1973 | 98.9234 | 83.1757 | 822 | 60 | 827 | 9 | 2 | 22.2222 | |
| ltrigg-rtg1 | INDEL | * | map_l125_m0_e0 | het | 94.4773 | 90.2896 | 99.0724 | 78.4572 | 530 | 57 | 534 | 5 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l125_m0_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 96.6197 | 10 | 1 | 12 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | map_l125_m0_e0 | homalt | 98.9449 | 99.2958 | 98.5965 | 86.3047 | 282 | 2 | 281 | 4 | 2 | 50.0000 | |
| ltrigg-rtg2 | SNP | * | map_l125_m0_e0 | * | 98.2838 | 96.7501 | 99.8669 | 59.4717 | 18755 | 630 | 18753 | 25 | 4 | 16.0000 | |
| ltrigg-rtg2 | SNP | * | map_l125_m0_e0 | het | 97.5444 | 95.3569 | 99.8346 | 54.8630 | 12076 | 588 | 12074 | 20 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | * | map_l125_m0_e0 | hetalt | 87.5000 | 77.7778 | 100.0000 | 74.0741 | 7 | 2 | 7 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | map_l125_m0_e0 | homalt | 99.6639 | 99.4041 | 99.9251 | 65.7800 | 6672 | 40 | 6672 | 5 | 4 | 80.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l125_m0_e0 | * | 97.4313 | 95.5645 | 99.3724 | 79.4409 | 474 | 22 | 475 | 3 | 1 | 33.3333 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l125_m0_e0 | het | 97.0335 | 94.7826 | 99.3939 | 76.8908 | 327 | 18 | 328 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.3607 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | map_l125_m0_e0 | homalt | 98.2935 | 97.2973 | 99.3103 | 79.6919 | 144 | 4 | 144 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | map_l125_m0_e0 | * | 97.8261 | 95.7447 | 100.0000 | 89.1827 | 45 | 2 | 45 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | map_l125_m0_e0 | het | 96.4286 | 93.1034 | 100.0000 | 89.3281 | 27 | 2 | 27 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.7808 | 6 | 0 | 6 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 86.6667 | 12 | 0 | 12 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | map_l125_m0_e0 | * | 98.1288 | 96.4862 | 99.8283 | 59.5773 | 6398 | 233 | 6396 | 11 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l125_m0_e0 | het | 97.3350 | 95.0239 | 99.7613 | 54.4961 | 4182 | 219 | 4180 | 10 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l125_m0_e0 | hetalt | 87.5000 | 77.7778 | 100.0000 | 74.0741 | 7 | 2 | 7 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | map_l125_m0_e0 | homalt | 99.7066 | 99.4597 | 99.9548 | 66.5911 | 2209 | 12 | 2209 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | map_l125_m0_e0 | * | 84.6154 | 73.3333 | 100.0000 | 91.9708 | 11 | 4 | 11 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l125_m0_e0 | het | 71.4286 | 55.5556 | 100.0000 | 92.0635 | 5 | 4 | 5 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l125_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | I6_15 | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 82.8571 | 6 | 0 | 6 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l125_m0_e0 | * | 60.0000 | 50.0000 | 75.0000 | 85.7143 | 3 | 3 | 3 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l125_m0_e0 | het | 66.6667 | 66.6667 | 66.6667 | 80.0000 | 2 | 1 | 2 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l125_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l125_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 87.5000 | 1 | 1 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | map_l125_m0_e0 | * | 96.8801 | 95.1613 | 98.6622 | 81.1713 | 295 | 15 | 295 | 4 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l125_m0_e0 | het | 95.4509 | 92.7083 | 98.3607 | 79.0138 | 178 | 14 | 180 | 3 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.3822 | 4 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | map_l125_m0_e0 | homalt | 99.1110 | 99.1228 | 99.0991 | 78.8571 | 113 | 1 | 110 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | map_l125_m0_e0 | * | 98.3571 | 96.8735 | 99.8869 | 59.3116 | 12363 | 399 | 12363 | 14 | 4 | 28.5714 | |
| ltrigg-rtg2 | SNP | ti | map_l125_m0_e0 | het | 97.6557 | 95.5343 | 99.8735 | 55.0552 | 7894 | 369 | 7894 | 10 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | map_l125_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 70.0000 | 6 | 2 | 6 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | ti | map_l125_m0_e0 | homalt | 99.6428 | 99.3765 | 99.9105 | 65.1370 | 4463 | 28 | 4463 | 4 | 4 | 100.0000 | |
| ckim-gatk | INDEL | * | map_l125_m0_e0 | * | 95.2938 | 98.5261 | 92.2669 | 92.7054 | 869 | 13 | 871 | 73 | 6 | 8.2192 | |
| ckim-gatk | INDEL | * | map_l125_m0_e0 | het | 93.6867 | 98.2964 | 89.4900 | 93.6438 | 577 | 10 | 579 | 68 | 2 | 2.9412 | |
| ckim-gatk | INDEL | * | map_l125_m0_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 95.5556 | 10 | 1 | 10 | 0 | 0 | ||
| ckim-gatk | INDEL | * | map_l125_m0_e0 | homalt | 98.7741 | 99.2958 | 98.2578 | 88.6874 | 282 | 2 | 282 | 5 | 4 | 80.0000 | |