PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
27101-27150 / 86044 show all | |||||||||||||||
| ckim-vqsr | INDEL | D16_PLUS | map_l125_m0_e0 | * | 96.0000 | 100.0000 | 92.3077 | 97.8003 | 12 | 0 | 12 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l125_m0_e0 | het | 94.7368 | 100.0000 | 90.0000 | 97.8678 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.1538 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.9167 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | map_l125_m0_e0 | * | 92.3077 | 100.0000 | 85.7143 | 97.9472 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | map_l125_m0_e0 | het | 85.7143 | 100.0000 | 75.0000 | 97.7901 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.8889 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.6755 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-vqsr | INDEL | I1_5 | map_l125_m0_e0 | * | 96.9502 | 97.4194 | 96.4856 | 92.5352 | 302 | 8 | 302 | 11 | 1 | 9.0909 | |
| ckim-vqsr | INDEL | I1_5 | map_l125_m0_e0 | het | 95.5844 | 95.8333 | 95.3368 | 94.0906 | 184 | 8 | 184 | 9 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.7447 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-vqsr | INDEL | I1_5 | map_l125_m0_e0 | homalt | 99.1304 | 100.0000 | 98.2759 | 86.0744 | 114 | 0 | 114 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | C16_PLUS | map_l125_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C16_PLUS | map_l125_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C16_PLUS | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C16_PLUS | map_l125_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-vqsr | SNP | * | map_l125_m0_e0 | * | 64.0727 | 47.4439 | 98.6485 | 91.7531 | 9197 | 10188 | 9197 | 126 | 0 | 0.0000 | |
| ckim-vqsr | SNP | * | map_l125_m0_e0 | het | 75.2621 | 60.9365 | 98.3935 | 91.9254 | 7717 | 4947 | 7717 | 126 | 0 | 0.0000 | |
| ckim-vqsr | SNP | * | map_l125_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 9 | 0 | 0 | 0 | ||||
| ckim-vqsr | SNP | * | map_l125_m0_e0 | homalt | 36.1328 | 22.0501 | 100.0000 | 90.6459 | 1480 | 5232 | 1480 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | map_l125_m0_e0 | * | 88.0000 | 91.6667 | 84.6154 | 97.2458 | 11 | 1 | 11 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l125_m0_e0 | het | 84.2105 | 88.8889 | 80.0000 | 97.1910 | 8 | 1 | 8 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.5517 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.7011 | 2 | 0 | 2 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | map_l125_m0_e0 | * | 97.4564 | 97.6190 | 97.2943 | 90.7643 | 861 | 21 | 863 | 24 | 6 | 25.0000 | |
| dgrover-gatk | INDEL | * | map_l125_m0_e0 | het | 97.2014 | 97.4446 | 96.9595 | 91.3349 | 572 | 15 | 574 | 18 | 2 | 11.1111 | |
| dgrover-gatk | INDEL | * | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.4733 | 11 | 0 | 11 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | map_l125_m0_e0 | homalt | 97.8873 | 97.8873 | 97.8873 | 88.7703 | 278 | 6 | 278 | 6 | 4 | 66.6667 | |
| ckim-vqsr | SNP | ti | map_l125_m0_e0 | * | 64.3231 | 47.6728 | 98.8465 | 91.2321 | 6084 | 6678 | 6084 | 71 | 0 | 0.0000 | |
| ckim-vqsr | SNP | ti | map_l125_m0_e0 | het | 75.6119 | 61.3095 | 98.6179 | 91.4278 | 5066 | 3197 | 5066 | 71 | 0 | 0.0000 | |
| ckim-vqsr | SNP | ti | map_l125_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 8 | 0 | 0 | 0 | ||||
| ckim-vqsr | SNP | ti | map_l125_m0_e0 | homalt | 36.9577 | 22.6676 | 100.0000 | 90.0284 | 1018 | 3473 | 1018 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | map_l125_m0_e0 | * | 63.5371 | 46.9462 | 98.2639 | 92.6176 | 3113 | 3518 | 3113 | 55 | 0 | 0.0000 | |
| ckim-vqsr | SNP | tv | map_l125_m0_e0 | het | 74.6025 | 60.2363 | 97.9675 | 92.7270 | 2651 | 1750 | 2651 | 55 | 0 | 0.0000 | |
| ckim-vqsr | SNP | tv | map_l125_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 9 | 0 | 0 | 0 | ||||
| ckim-vqsr | SNP | tv | map_l125_m0_e0 | homalt | 34.4391 | 20.8014 | 100.0000 | 91.7691 | 462 | 1759 | 462 | 0 | 0 | ||
| dgrover-gatk | INDEL | C1_5 | map_l125_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C1_5 | map_l125_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C1_5 | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C1_5 | map_l125_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C6_15 | map_l125_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C6_15 | map_l125_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C6_15 | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| dgrover-gatk | INDEL | C6_15 | map_l125_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| egarrison-hhga | SNP | tv | map_l125_m0_e0 | * | 99.1050 | 98.5221 | 99.6948 | 73.4104 | 6533 | 98 | 6533 | 20 | 9 | 45.0000 | |
| egarrison-hhga | SNP | tv | map_l125_m0_e0 | het | 98.8440 | 98.1141 | 99.5849 | 74.9393 | 4318 | 83 | 4318 | 18 | 7 | 38.8889 | |
| egarrison-hhga | SNP | tv | map_l125_m0_e0 | hetalt | 87.5000 | 77.7778 | 100.0000 | 88.1356 | 7 | 2 | 7 | 0 | 0 | ||
| egarrison-hhga | SNP | tv | map_l125_m0_e0 | homalt | 99.6615 | 99.4147 | 99.9095 | 69.6595 | 2208 | 13 | 2208 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l125_m0_e0 | * | 72.7273 | 66.6667 | 80.0000 | 90.1961 | 4 | 2 | 4 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l125_m0_e0 | het | 66.6667 | 66.6667 | 66.6667 | 91.8919 | 2 | 1 | 2 | 1 | 0 | 0.0000 | |