PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
26901-26950 / 86044 show all | |||||||||||||||
| gduggal-bwafb | SNP | tv | map_l125_m0_e0 | * | 98.0737 | 98.2808 | 97.8675 | 77.6619 | 6517 | 114 | 6517 | 142 | 29 | 20.4225 | |
| gduggal-bwafb | SNP | tv | map_l125_m0_e0 | het | 97.4938 | 98.1141 | 96.8813 | 79.0298 | 4318 | 83 | 4318 | 139 | 26 | 18.7050 | |
| gduggal-bwafb | SNP | tv | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 86.1538 | 9 | 0 | 9 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_l125_m0_e0 | homalt | 99.2297 | 98.6042 | 99.8632 | 74.1727 | 2190 | 31 | 2190 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | INDEL | * | map_l125_m0_e0 | * | 66.9676 | 50.4535 | 99.5526 | 96.3322 | 445 | 437 | 445 | 2 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | * | map_l125_m0_e0 | het | 68.5268 | 52.2998 | 99.3528 | 96.8009 | 307 | 280 | 307 | 2 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | * | map_l125_m0_e0 | hetalt | 62.5000 | 45.4545 | 100.0000 | 98.8399 | 5 | 6 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l125_m0_e0 | homalt | 63.7890 | 46.8310 | 100.0000 | 93.6576 | 133 | 151 | 133 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l125_m0_e0 | * | 59.7015 | 42.5532 | 100.0000 | 98.0806 | 20 | 27 | 20 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l125_m0_e0 | het | 58.5366 | 41.3793 | 100.0000 | 98.5419 | 12 | 17 | 12 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l125_m0_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 96.8750 | 3 | 3 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l125_m0_e0 | homalt | 58.8235 | 41.6667 | 100.0000 | 95.9350 | 5 | 7 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | C6_15 | map_l125_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | map_l125_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C6_15 | map_l125_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | map_l125_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | map_l125_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | map_l125_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C1_5 | map_l125_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C1_5 | map_l125_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C1_5 | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C1_5 | map_l125_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | D1_5 | map_l125_m0_e0 | * | 69.6335 | 53.6290 | 99.2537 | 95.9184 | 266 | 230 | 266 | 2 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l125_m0_e0 | het | 70.5224 | 54.7826 | 98.9529 | 96.3515 | 189 | 156 | 189 | 2 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 99.2701 | 2 | 1 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l125_m0_e0 | homalt | 67.2646 | 50.6757 | 100.0000 | 92.9044 | 75 | 73 | 75 | 0 | 0 | ||
| gduggal-snapfb | INDEL | C16_PLUS | map_l125_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C16_PLUS | map_l125_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C16_PLUS | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C16_PLUS | map_l125_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | * | map_l125_m0_e0 | * | 93.5292 | 97.4826 | 89.8840 | 82.4074 | 18897 | 488 | 18668 | 2101 | 98 | 4.6645 | |
| gduggal-bwavard | SNP | * | map_l125_m0_e0 | het | 91.2008 | 97.7811 | 85.4502 | 85.0594 | 12383 | 281 | 12251 | 2086 | 87 | 4.1707 | |
| gduggal-bwavard | SNP | * | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | * | map_l125_m0_e0 | homalt | 98.3897 | 97.0501 | 99.7668 | 70.8893 | 6514 | 198 | 6417 | 15 | 11 | 73.3333 | |
| gduggal-snapfb | INDEL | C6_15 | map_l125_m0_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C6_15 | map_l125_m0_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C6_15 | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C6_15 | map_l125_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | * | map_l125_m0_e0 | * | 92.6762 | 91.7234 | 93.6490 | 88.7210 | 809 | 73 | 811 | 55 | 16 | 29.0909 | |
| gduggal-snapfb | INDEL | * | map_l125_m0_e0 | het | 91.8622 | 90.9710 | 92.7711 | 85.6224 | 534 | 53 | 539 | 42 | 9 | 21.4286 | |
| gduggal-snapfb | INDEL | * | map_l125_m0_e0 | hetalt | 64.0000 | 72.7273 | 57.1429 | 96.1111 | 8 | 3 | 4 | 3 | 1 | 33.3333 | |
| gduggal-snapfb | INDEL | * | map_l125_m0_e0 | homalt | 95.1935 | 94.0141 | 96.4029 | 91.9583 | 267 | 17 | 268 | 10 | 6 | 60.0000 | |
| gduggal-bwavard | SNP | ti | map_l125_m0_e0 | * | 94.2056 | 97.3045 | 91.2979 | 82.1654 | 12418 | 344 | 12317 | 1174 | 66 | 5.6218 | |
| gduggal-bwavard | SNP | ti | map_l125_m0_e0 | het | 92.1685 | 97.6038 | 87.3066 | 84.9758 | 8065 | 198 | 8013 | 1165 | 59 | 5.0644 | |
| gduggal-bwavard | SNP | ti | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 8 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | ti | map_l125_m0_e0 | homalt | 98.3384 | 96.9272 | 99.7913 | 70.3716 | 4353 | 138 | 4304 | 9 | 7 | 77.7778 | |
| gduggal-bwavard | SNP | tv | map_l125_m0_e0 | * | 92.0149 | 97.7077 | 86.9489 | 82.9272 | 6479 | 152 | 6469 | 971 | 34 | 3.5015 | |
| gduggal-bwavard | SNP | tv | map_l125_m0_e0 | het | 89.1615 | 98.1141 | 81.7062 | 85.2941 | 4318 | 83 | 4310 | 965 | 30 | 3.1088 | |