PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
26801-26850 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | C1_5 | map_l125_m0_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C1_5 | map_l125_m0_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C1_5 | map_l125_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C1_5 | map_l125_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | I6_15 | map_l125_m0_e0 | * | 71.4286 | 66.6667 | 76.9231 | 86.8687 | 10 | 5 | 10 | 3 | 2 | 66.6667 | |
| gduggal-snapfb | INDEL | I6_15 | map_l125_m0_e0 | het | 77.7778 | 77.7778 | 77.7778 | 82.3529 | 7 | 2 | 7 | 2 | 1 | 50.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 87.5000 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l125_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 92.5000 | 3 | 3 | 3 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D16_PLUS | map_l125_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 12 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | map_l125_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | map_l125_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| gduggal-snapfb | SNP | ti | map_l125_m0_e0 | * | 95.4780 | 94.9616 | 96.0000 | 76.0355 | 12119 | 643 | 12120 | 505 | 265 | 52.4752 | |
| gduggal-snapfb | SNP | ti | map_l125_m0_e0 | het | 95.0321 | 95.8369 | 94.2408 | 72.9383 | 7919 | 344 | 7920 | 484 | 255 | 52.6860 | |
| gduggal-snapfb | SNP | ti | map_l125_m0_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 93.2692 | 7 | 1 | 7 | 0 | 0 | ||
| gduggal-snapfb | SNP | ti | map_l125_m0_e0 | homalt | 96.3354 | 93.3645 | 99.5017 | 80.4209 | 4193 | 298 | 4193 | 21 | 10 | 47.6190 | |
| gduggal-snapfb | INDEL | I1_5 | map_l125_m0_e0 | * | 93.7753 | 95.1613 | 92.4290 | 89.6642 | 295 | 15 | 293 | 24 | 5 | 20.8333 | |
| gduggal-snapfb | INDEL | I1_5 | map_l125_m0_e0 | het | 92.5065 | 93.2292 | 91.7949 | 87.1287 | 179 | 13 | 179 | 16 | 2 | 12.5000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 66.6667 | 100.0000 | 50.0000 | 94.9153 | 4 | 0 | 3 | 3 | 1 | 33.3333 | |
| gduggal-snapfb | INDEL | I1_5 | map_l125_m0_e0 | homalt | 96.9508 | 98.2456 | 95.6897 | 91.9107 | 112 | 2 | 111 | 5 | 2 | 40.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l125_m0_e0 | * | 95.1860 | 95.5645 | 94.8104 | 87.9856 | 474 | 22 | 475 | 26 | 7 | 26.9231 | |
| gduggal-snapfb | INDEL | D1_5 | map_l125_m0_e0 | het | 94.2433 | 95.0725 | 93.4286 | 84.6491 | 328 | 17 | 327 | 23 | 5 | 21.7391 | |
| gduggal-snapfb | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.0588 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | map_l125_m0_e0 | homalt | 97.2926 | 96.6216 | 97.9730 | 91.7226 | 143 | 5 | 145 | 3 | 2 | 66.6667 | |
| gduggal-snapfb | INDEL | D6_15 | map_l125_m0_e0 | * | 79.6826 | 70.2128 | 92.1053 | 89.7849 | 33 | 14 | 35 | 3 | 3 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l125_m0_e0 | het | 80.3709 | 68.9655 | 96.2963 | 85.1648 | 20 | 9 | 26 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l125_m0_e0 | hetalt | 66.6667 | 100.0000 | 4 | 2 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | D6_15 | map_l125_m0_e0 | homalt | 78.2609 | 75.0000 | 81.8182 | 93.9891 | 9 | 3 | 9 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | I16_PLUS | map_l125_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 6 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | map_l125_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | map_l125_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| gduggal-snapfb | SNP | * | map_l125_m0_e0 | * | 95.4423 | 95.2231 | 95.6625 | 77.2744 | 18459 | 926 | 18460 | 837 | 394 | 47.0729 | |
| gduggal-snapfb | SNP | * | map_l125_m0_e0 | het | 95.0102 | 96.1466 | 93.9004 | 73.7575 | 12176 | 488 | 12177 | 791 | 378 | 47.7876 | |
| gduggal-snapfb | SNP | * | map_l125_m0_e0 | hetalt | 94.1176 | 88.8889 | 100.0000 | 94.7020 | 8 | 1 | 8 | 0 | 0 | ||
| gduggal-snapfb | SNP | * | map_l125_m0_e0 | homalt | 96.2940 | 93.4893 | 99.2723 | 82.1168 | 6275 | 437 | 6275 | 46 | 16 | 34.7826 | |
| gduggal-bwaplat | SNP | tv | map_l125_m0_e0 | * | 61.5481 | 44.5483 | 99.5283 | 92.9610 | 2954 | 3677 | 2954 | 14 | 5 | 35.7143 | |
| gduggal-bwaplat | SNP | tv | map_l125_m0_e0 | het | 64.9641 | 48.2618 | 99.3452 | 94.0434 | 2124 | 2277 | 2124 | 14 | 5 | 35.7143 | |
| gduggal-bwaplat | SNP | tv | map_l125_m0_e0 | hetalt | 20.0000 | 11.1111 | 100.0000 | 98.9796 | 1 | 8 | 1 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | map_l125_m0_e0 | homalt | 54.3607 | 37.3255 | 100.0000 | 86.5727 | 829 | 1392 | 829 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l125_m0_e0 | * | 0.0000 | 100.0000 | 0 | 6 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l125_m0_e0 | het | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l125_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l125_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | C16_PLUS | map_l125_m0_e0 | * | 0.0000 | 0.0000 | 98.5075 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwavard | INDEL | C16_PLUS | map_l125_m0_e0 | het | 0.0000 | 0.0000 | 98.2456 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwavard | INDEL | C16_PLUS | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | C16_PLUS | map_l125_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | ti | map_l125_m0_e0 | * | 63.7993 | 47.0146 | 99.2230 | 91.1459 | 6000 | 6762 | 6002 | 47 | 16 | 34.0426 | |
| gduggal-bwaplat | SNP | ti | map_l125_m0_e0 | het | 68.0749 | 51.8819 | 98.9622 | 92.4159 | 4287 | 3976 | 4291 | 45 | 14 | 31.1111 | |