PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
26751-26800 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | I6_15 | map_l125_m0_e0 | het | 57.1429 | 88.8889 | 42.1053 | 92.5490 | 8 | 1 | 8 | 11 | 4 | 36.3636 | |
| gduggal-bwavard | INDEL | I6_15 | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | I6_15 | map_l125_m0_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 90.4762 | 2 | 4 | 2 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | map_l125_m0_e0 | * | 90.7857 | 97.5806 | 84.8754 | 90.3137 | 484 | 12 | 477 | 85 | 9 | 10.5882 | |
| gduggal-bwavard | INDEL | D1_5 | map_l125_m0_e0 | het | 88.6305 | 99.1304 | 80.1418 | 91.5077 | 342 | 3 | 339 | 84 | 8 | 9.5238 | |
| gduggal-bwavard | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D1_5 | map_l125_m0_e0 | homalt | 97.5848 | 95.9459 | 99.2806 | 83.0694 | 142 | 6 | 138 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | C6_15 | map_l125_m0_e0 | * | 0.0000 | 0.0000 | 99.2366 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwavard | INDEL | C6_15 | map_l125_m0_e0 | het | 0.0000 | 0.0000 | 99.1935 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwavard | INDEL | C6_15 | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | C6_15 | map_l125_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | D16_PLUS | map_l125_m0_e0 | * | 68.9655 | 83.3333 | 58.8235 | 95.6962 | 10 | 2 | 10 | 7 | 2 | 28.5714 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l125_m0_e0 | het | 69.5652 | 88.8889 | 57.1429 | 96.0114 | 8 | 1 | 8 | 6 | 1 | 16.6667 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D16_PLUS | map_l125_m0_e0 | homalt | 80.0000 | 100.0000 | 66.6667 | 93.1818 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l125_m0_e0 | * | 66.6667 | 66.6667 | 66.6667 | 93.2584 | 4 | 2 | 4 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l125_m0_e0 | het | 75.0000 | 100.0000 | 60.0000 | 93.8272 | 3 | 0 | 3 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | I16_PLUS | map_l125_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 87.5000 | 1 | 1 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I1_5 | map_l125_m0_e0 | * | 93.1788 | 95.1613 | 91.2773 | 90.7573 | 295 | 15 | 293 | 28 | 6 | 21.4286 | |
| gduggal-bwavard | INDEL | I1_5 | map_l125_m0_e0 | het | 92.3077 | 96.8750 | 88.1517 | 92.7937 | 186 | 6 | 186 | 25 | 5 | 20.0000 | |
| gduggal-bwavard | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C16_PLUS | map_l125_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C16_PLUS | map_l125_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C16_PLUS | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C16_PLUS | map_l125_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| eyeh-varpipe | SNP | * | map_l125_m0_e0 | * | 98.1324 | 99.6131 | 96.6952 | 78.1519 | 19310 | 75 | 18784 | 642 | 22 | 3.4268 | |
| eyeh-varpipe | SNP | * | map_l125_m0_e0 | het | 97.2776 | 99.5499 | 95.1068 | 80.0626 | 12607 | 57 | 12245 | 630 | 17 | 2.6984 | |
| eyeh-varpipe | SNP | * | map_l125_m0_e0 | hetalt | 99.2908 | 100.0000 | 98.5915 | 76.4120 | 9 | 0 | 70 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | map_l125_m0_e0 | homalt | 99.7810 | 99.7318 | 99.8302 | 73.0404 | 6694 | 18 | 6469 | 11 | 5 | 45.4545 | |
| gduggal-bwafb | INDEL | C6_15 | map_l125_m0_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C6_15 | map_l125_m0_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C6_15 | map_l125_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C6_15 | map_l125_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | D16_PLUS | map_l125_m0_e0 | * | 86.9565 | 83.3333 | 90.9091 | 90.9091 | 10 | 2 | 10 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l125_m0_e0 | het | 94.1176 | 88.8889 | 100.0000 | 87.3016 | 8 | 1 | 8 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | map_l125_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | D16_PLUS | map_l125_m0_e0 | homalt | 80.0000 | 100.0000 | 66.6667 | 94.6429 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | * | map_l125_m0_e0 | * | 96.5071 | 95.4649 | 97.5723 | 88.6736 | 842 | 40 | 844 | 21 | 5 | 23.8095 | |
| gduggal-bwafb | INDEL | * | map_l125_m0_e0 | het | 95.7648 | 94.0375 | 97.5567 | 88.0025 | 552 | 35 | 559 | 14 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | * | map_l125_m0_e0 | hetalt | 90.0000 | 81.8182 | 100.0000 | 97.4194 | 9 | 2 | 4 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | map_l125_m0_e0 | homalt | 98.2517 | 98.9437 | 97.5694 | 89.3570 | 281 | 3 | 281 | 7 | 5 | 71.4286 | |
| eyeh-varpipe | SNP | ti | map_l125_m0_e0 | * | 99.0106 | 99.6082 | 98.4201 | 77.7397 | 12712 | 50 | 12521 | 201 | 11 | 5.4726 | |
| eyeh-varpipe | SNP | ti | map_l125_m0_e0 | het | 98.5647 | 99.5038 | 97.6432 | 79.9389 | 8222 | 41 | 8079 | 195 | 8 | 4.1026 | |
| eyeh-varpipe | SNP | ti | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.0988 | 8 | 0 | 63 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | map_l125_m0_e0 | homalt | 99.8314 | 99.7996 | 99.8632 | 71.9880 | 4482 | 9 | 4379 | 6 | 3 | 50.0000 | |
| eyeh-varpipe | SNP | tv | map_l125_m0_e0 | * | 96.4575 | 99.6230 | 93.4869 | 79.0795 | 6606 | 25 | 6574 | 458 | 11 | 2.4018 | |
| eyeh-varpipe | SNP | tv | map_l125_m0_e0 | het | 94.8919 | 99.6364 | 90.5787 | 80.4588 | 4385 | 16 | 4336 | 451 | 9 | 1.9956 | |
| eyeh-varpipe | SNP | tv | map_l125_m0_e0 | hetalt | 98.7342 | 100.0000 | 97.5000 | 78.2609 | 9 | 0 | 39 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | map_l125_m0_e0 | homalt | 99.6613 | 99.5948 | 99.7279 | 75.3135 | 2212 | 9 | 2199 | 6 | 2 | 33.3333 | |