PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
26301-26350 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | C1_5 | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 65.8537 | 94.7301 | 0 | 0 | 27 | 14 | 7 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 56.2500 | 94.7798 | 0 | 0 | 18 | 14 | 7 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | C1_5 | map_l125_m1_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 94.5455 | 0 | 0 | 9 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | map_l125_m1_e0 | * | 99.1503 | 99.4630 | 98.8396 | 71.8727 | 15930 | 86 | 15928 | 187 | 28 | 14.9733 | |
| bgallagher-sentieon | SNP | tv | map_l125_m1_e0 | het | 98.8364 | 99.4173 | 98.2622 | 74.9493 | 10067 | 59 | 10065 | 178 | 22 | 12.3596 | |
| bgallagher-sentieon | SNP | tv | map_l125_m1_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 71.4286 | 28 | 2 | 28 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | map_l125_m1_e0 | homalt | 99.7095 | 99.5734 | 99.8460 | 64.1604 | 5835 | 25 | 5835 | 9 | 6 | 66.6667 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l125_m1_e0 | * | 98.7373 | 98.7952 | 98.6795 | 85.8454 | 820 | 10 | 822 | 11 | 2 | 18.1818 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l125_m1_e0 | het | 98.1477 | 97.9424 | 98.3539 | 86.9705 | 476 | 10 | 478 | 8 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.4107 | 17 | 0 | 17 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I1_5 | map_l125_m1_e0 | homalt | 99.5434 | 100.0000 | 99.0909 | 82.9104 | 327 | 0 | 327 | 3 | 2 | 66.6667 | |
| bgallagher-sentieon | SNP | ti | map_l125_m1_e0 | * | 99.3257 | 99.4273 | 99.2243 | 71.0550 | 29167 | 168 | 29163 | 228 | 42 | 18.4211 | |
| bgallagher-sentieon | SNP | ti | map_l125_m1_e0 | het | 99.0798 | 99.3430 | 98.8180 | 74.4018 | 18146 | 120 | 18142 | 217 | 33 | 15.2074 | |
| bgallagher-sentieon | SNP | ti | map_l125_m1_e0 | hetalt | 97.8723 | 95.8333 | 100.0000 | 64.0625 | 23 | 1 | 23 | 0 | 0 | ||
| bgallagher-sentieon | SNP | ti | map_l125_m1_e0 | homalt | 99.7370 | 99.5745 | 99.9001 | 63.0037 | 10998 | 47 | 10998 | 11 | 9 | 81.8182 | |
| cchapple-custom | INDEL | C16_PLUS | map_l125_m1_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | C16_PLUS | map_l125_m1_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | C16_PLUS | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | INDEL | C16_PLUS | map_l125_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| bgallagher-sentieon | INDEL | I6_15 | map_l125_m1_e0 | * | 93.2039 | 90.5660 | 96.0000 | 91.7492 | 48 | 5 | 48 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | map_l125_m1_e0 | het | 91.5254 | 90.0000 | 93.1034 | 91.9220 | 27 | 3 | 27 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 85.7143 | 7 | 1 | 7 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | map_l125_m1_e0 | homalt | 96.5517 | 93.3333 | 100.0000 | 92.9293 | 14 | 1 | 14 | 0 | 0 | ||
| bgallagher-sentieon | SNP | * | map_l125_m1_e0 | * | 99.2644 | 99.4418 | 99.0876 | 71.3529 | 45074 | 253 | 45068 | 415 | 70 | 16.8675 | |
| bgallagher-sentieon | SNP | * | map_l125_m1_e0 | het | 98.9928 | 99.3695 | 98.6190 | 74.6006 | 28213 | 179 | 28207 | 395 | 55 | 13.9241 | |
| bgallagher-sentieon | SNP | * | map_l125_m1_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 71.4286 | 28 | 2 | 28 | 0 | 0 | ||
| bgallagher-sentieon | SNP | * | map_l125_m1_e0 | homalt | 99.7275 | 99.5741 | 99.8813 | 63.4132 | 16833 | 72 | 16833 | 20 | 15 | 75.0000 | |
| cchapple-custom | INDEL | * | map_l125_m1_e0 | * | 95.7860 | 96.5828 | 95.0023 | 86.4180 | 2035 | 72 | 2072 | 109 | 23 | 21.1009 | |
| cchapple-custom | INDEL | * | map_l125_m1_e0 | het | 94.5817 | 96.3296 | 92.8962 | 87.3662 | 1286 | 49 | 1360 | 104 | 19 | 18.2692 | |
| cchapple-custom | INDEL | * | map_l125_m1_e0 | hetalt | 0.0000 | 95.0000 | 0.0000 | 0.0000 | 38 | 2 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | map_l125_m1_e0 | homalt | 98.2049 | 97.1311 | 99.3026 | 83.9597 | 711 | 21 | 712 | 5 | 4 | 80.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l125_m1_e0 | * | 90.5660 | 88.8889 | 92.3077 | 97.4181 | 24 | 3 | 24 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l125_m1_e0 | het | 90.0000 | 90.0000 | 90.0000 | 97.3545 | 18 | 2 | 18 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l125_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 95.2381 | 2 | 1 | 2 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.0861 | 4 | 0 | 4 | 0 | 0 | ||
| asubramanian-gatk | INDEL | C16_PLUS | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 91.6667 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C16_PLUS | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 88.8889 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C16_PLUS | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| asubramanian-gatk | INDEL | C16_PLUS | map_l125_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| astatham-gatk | SNP | * | map_l125_m1_e0 | * | 91.2465 | 84.0779 | 99.7513 | 74.8310 | 38110 | 7217 | 38104 | 95 | 43 | 45.2632 | |
| astatham-gatk | SNP | * | map_l125_m1_e0 | het | 85.6838 | 75.1515 | 99.6496 | 79.7424 | 21337 | 7055 | 21331 | 75 | 27 | 36.0000 | |
| astatham-gatk | SNP | * | map_l125_m1_e0 | hetalt | 98.3051 | 96.6667 | 100.0000 | 71.0000 | 29 | 1 | 29 | 0 | 0 | ||
| astatham-gatk | SNP | * | map_l125_m1_e0 | homalt | 99.4624 | 99.0476 | 99.8807 | 63.5573 | 16744 | 161 | 16744 | 20 | 16 | 80.0000 | |
| astatham-gatk | SNP | ti | map_l125_m1_e0 | * | 91.1797 | 83.9407 | 99.7852 | 74.5658 | 24624 | 4711 | 24620 | 53 | 29 | 54.7170 | |
| astatham-gatk | SNP | ti | map_l125_m1_e0 | het | 85.4533 | 74.7728 | 99.6933 | 79.6242 | 13658 | 4608 | 13654 | 42 | 19 | 45.2381 | |
| astatham-gatk | SNP | ti | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 64.1791 | 24 | 0 | 24 | 0 | 0 | ||
| astatham-gatk | SNP | ti | map_l125_m1_e0 | homalt | 99.4818 | 99.0675 | 99.8996 | 63.1497 | 10942 | 103 | 10942 | 11 | 10 | 90.9091 | |
| asubramanian-gatk | INDEL | * | map_l125_m1_e0 | * | 91.1206 | 86.6635 | 96.0609 | 96.9394 | 1826 | 281 | 1829 | 75 | 8 | 10.6667 | |
| asubramanian-gatk | INDEL | * | map_l125_m1_e0 | het | 88.1603 | 83.0712 | 93.9138 | 91.7400 | 1109 | 226 | 1111 | 72 | 7 | 9.7222 | |