PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
26101-26150 / 86044 show all | |||||||||||||||
hfeng-pmm1 | INDEL | I6_15 | map_l125_m1_e0 | * | 89.7959 | 83.0189 | 97.7778 | 90.5263 | 44 | 9 | 44 | 1 | 1 | 100.0000 | |
hfeng-pmm1 | INDEL | I6_15 | map_l125_m1_e0 | het | 85.1852 | 76.6667 | 95.8333 | 91.0448 | 23 | 7 | 23 | 1 | 1 | 100.0000 | |
hfeng-pmm1 | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 88.5246 | 7 | 1 | 7 | 0 | 0 | ||
hfeng-pmm1 | INDEL | I6_15 | map_l125_m1_e0 | homalt | 96.5517 | 93.3333 | 100.0000 | 90.4110 | 14 | 1 | 14 | 0 | 0 | ||
hfeng-pmm1 | SNP | tv | map_l125_m1_e0 | * | 99.4714 | 99.2945 | 99.6491 | 69.3117 | 15903 | 113 | 15901 | 56 | 16 | 28.5714 | |
hfeng-pmm1 | SNP | tv | map_l125_m1_e0 | het | 99.2869 | 99.0026 | 99.5728 | 70.2971 | 10025 | 101 | 10023 | 43 | 11 | 25.5814 | |
hfeng-pmm1 | SNP | tv | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 77.6119 | 30 | 0 | 30 | 0 | 0 | ||
hfeng-pmm1 | SNP | tv | map_l125_m1_e0 | homalt | 99.7867 | 99.7952 | 99.7782 | 67.3918 | 5848 | 12 | 5848 | 13 | 5 | 38.4615 | |
hfeng-pmm1 | INDEL | I1_5 | map_l125_m1_e0 | * | 98.6079 | 98.0723 | 99.1495 | 84.7395 | 814 | 16 | 816 | 7 | 2 | 28.5714 | |
hfeng-pmm1 | INDEL | I1_5 | map_l125_m1_e0 | het | 97.9184 | 96.7078 | 99.1597 | 85.5451 | 470 | 16 | 472 | 4 | 0 | 0.0000 | |
hfeng-pmm1 | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.2540 | 17 | 0 | 17 | 0 | 0 | ||
hfeng-pmm1 | INDEL | I1_5 | map_l125_m1_e0 | homalt | 99.5434 | 100.0000 | 99.0909 | 82.1429 | 327 | 0 | 327 | 3 | 2 | 66.6667 | |
hfeng-pmm1 | SNP | ti | map_l125_m1_e0 | * | 99.4515 | 99.2091 | 99.6951 | 68.8149 | 29103 | 232 | 29099 | 89 | 25 | 28.0899 | |
hfeng-pmm1 | SNP | ti | map_l125_m1_e0 | het | 99.2306 | 98.8613 | 99.6028 | 70.2477 | 18058 | 208 | 18054 | 72 | 18 | 25.0000 | |
hfeng-pmm1 | SNP | ti | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 71.0843 | 24 | 0 | 24 | 0 | 0 | ||
hfeng-pmm1 | SNP | ti | map_l125_m1_e0 | homalt | 99.8143 | 99.7827 | 99.8460 | 66.1307 | 11021 | 24 | 11021 | 17 | 7 | 41.1765 | |
ghariani-varprowl | INDEL | C6_15 | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
ghariani-varprowl | INDEL | C6_15 | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
ghariani-varprowl | INDEL | C6_15 | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
ghariani-varprowl | INDEL | C6_15 | map_l125_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
ghariani-varprowl | INDEL | * | map_l125_m1_e0 | * | 91.7859 | 94.3996 | 89.3130 | 93.6193 | 1989 | 118 | 1989 | 238 | 77 | 32.3529 | |
ghariani-varprowl | INDEL | * | map_l125_m1_e0 | het | 91.1754 | 97.9026 | 85.3133 | 91.4837 | 1307 | 28 | 1307 | 225 | 73 | 32.4444 | |
ghariani-varprowl | INDEL | * | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 40 | 0 | 0 | 0 | |||
ghariani-varprowl | INDEL | * | map_l125_m1_e0 | homalt | 95.5851 | 93.1694 | 98.1295 | 82.8225 | 682 | 50 | 682 | 13 | 4 | 30.7692 | |
gduggal-snapvard | INDEL | I6_15 | map_l125_m1_e0 | * | 59.6747 | 64.1509 | 55.7823 | 82.2678 | 34 | 19 | 82 | 65 | 50 | 76.9231 | |
gduggal-snapvard | INDEL | I6_15 | map_l125_m1_e0 | het | 65.6975 | 86.6667 | 52.8986 | 82.1244 | 26 | 4 | 73 | 65 | 50 | 76.9231 | |
gduggal-snapvard | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 0.0000 | 50.0000 | 0.0000 | 0.0000 | 4 | 4 | 0 | 0 | 0 | ||
gduggal-snapvard | INDEL | I6_15 | map_l125_m1_e0 | homalt | 42.1053 | 26.6667 | 100.0000 | 84.2105 | 4 | 11 | 9 | 0 | 0 | ||
gduggal-snapvard | SNP | tv | map_l125_m1_e0 | * | 93.0563 | 96.9343 | 89.4767 | 78.3907 | 15525 | 491 | 15475 | 1820 | 120 | 6.5934 | |
gduggal-snapvard | SNP | tv | map_l125_m1_e0 | het | 90.5242 | 97.5015 | 84.4788 | 81.5577 | 9873 | 253 | 9846 | 1809 | 112 | 6.1913 | |
gduggal-snapvard | SNP | tv | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 30 | 0 | 0 | 0 | |||
gduggal-snapvard | SNP | tv | map_l125_m1_e0 | homalt | 98.0991 | 96.4505 | 99.8050 | 66.5043 | 5652 | 208 | 5629 | 11 | 8 | 72.7273 | |
ghariani-varprowl | INDEL | C1_5 | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
ghariani-varprowl | INDEL | C1_5 | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
ghariani-varprowl | INDEL | C1_5 | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
ghariani-varprowl | INDEL | C1_5 | map_l125_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
gduggal-snapvard | SNP | * | map_l125_m1_e0 | * | 93.5846 | 96.5275 | 90.8158 | 77.9328 | 43753 | 1574 | 43182 | 4367 | 333 | 7.6254 | |
gduggal-snapvard | SNP | * | map_l125_m1_e0 | het | 91.2586 | 96.8794 | 86.2542 | 81.2481 | 27506 | 886 | 27183 | 4332 | 306 | 7.0637 | |
gduggal-snapvard | SNP | * | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 30 | 0 | 0 | 0 | |||
gduggal-snapvard | SNP | * | map_l125_m1_e0 | homalt | 97.9102 | 96.1077 | 99.7817 | 66.1808 | 16247 | 658 | 15999 | 35 | 27 | 77.1429 | |
gduggal-snapvard | SNP | ti | map_l125_m1_e0 | * | 93.7547 | 96.2264 | 91.4068 | 77.7724 | 28228 | 1107 | 27965 | 2629 | 225 | 8.5584 | |
gduggal-snapvard | SNP | ti | map_l125_m1_e0 | het | 91.5438 | 96.5345 | 87.0437 | 81.1544 | 17633 | 633 | 17501 | 2605 | 206 | 7.9079 | |
gduggal-snapvard | SNP | ti | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 24 | 0 | 0 | 0 | |||
gduggal-snapvard | SNP | ti | map_l125_m1_e0 | homalt | 97.8107 | 95.9258 | 99.7712 | 66.1153 | 10595 | 450 | 10464 | 24 | 19 | 79.1667 | |
ghariani-varprowl | INDEL | C16_PLUS | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
ghariani-varprowl | INDEL | C16_PLUS | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
ghariani-varprowl | INDEL | C16_PLUS | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
ghariani-varprowl | INDEL | C16_PLUS | map_l125_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
gduggal-snapplat | INDEL | D6_15 | map_l125_m1_e0 | * | 45.1325 | 31.6239 | 78.7879 | 95.2518 | 37 | 80 | 26 | 7 | 1 | 14.2857 | |
gduggal-snapplat | INDEL | D6_15 | map_l125_m1_e0 | het | 47.3921 | 35.9375 | 69.5652 | 94.6882 | 23 | 41 | 16 | 7 | 1 | 14.2857 |